1rmr

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(New page: 200px<br /><applet load="1rmr" size="450" color="white" frame="true" align="right" spinBox="true" caption="1rmr, resolution 2.50&Aring;" /> '''Crystal Structure of...)
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[[Image:1rmr.gif|left|200px]]<br /><applet load="1rmr" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1rmr, resolution 2.50&Aring;" />
 
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'''Crystal Structure of Schistatin, a Disintegrin Homodimer from saw-scaled Viper (Echis carinatus) at 2.5 A resolution'''<br />
 
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==Overview==
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==Crystal Structure of Schistatin, a Disintegrin Homodimer from saw-scaled Viper (Echis carinatus) at 2.5 A resolution==
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This is the first structure of a biological homodimer of disintegrin., Disintegrins are a class of small (4-14 kDa) proteins that bind to, transmembrane integrins selectively. The present molecule is the first, homodimer that has been isolated from the venom of Echis carinatus. The, monomeric chain contains 64 amino acid residues. The three-dimensional, structure of schistatin has been determined by the multiple isomorphous, replacement method. It has been refined to an R-factor of 0.190 using all, the data to 2.5 A resolution. The two subunits of the disintegrin, homodimer are related by a 2-fold crystallographic symmetry. Thus, the, crystallographic asymmetric unit contains a monomer of disintegrin. The, monomer folds into an up-down topology with three sets of antiparallel, beta-strands. The structure is well ordered with four intramolecular, disulfide bonds. the two monomers are firmly linked to each other through, two intermolecular disulfide bridges at their N termini together with, several other interactions. This structure has corrected the error in the, disulfide bond pattern of the two intermolecular disulfide bridges that, was reported earlier using chemical methods. Unique sequence and, structural features of the schistatin monomers suggest that they have the, ability to bind well with both alphaIIb beta3 and alphav beta3 integrins., The N termini anchored two chains of the dimer diverge away at their C, termini exposing the Arg-Gly-Asp motif into opposite directions thus, enhancing their binding efficiency to integrins. This is one of the unique, features of the present disintegrin homodimer and seems to be responsible, for the clustering of integrin molecules. The homodimer binds to integrins, apparently with a higher affinity than the monomers and also plays a role, in the signaling pathway.
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<StructureSection load='1rmr' size='340' side='right'caption='[[1rmr]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1rmr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Echis_carinatus Echis carinatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RMR FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rmr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmr OCA], [https://pdbe.org/1rmr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rmr RCSB], [https://www.ebi.ac.uk/pdbsum/1rmr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rmr ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DIDS_ECHCA DIDS_ECHCA] May bind to both alpha-IIb/beta-3 (ITGA2B/ITGB3) and alpha-V/beta-3 (ITGAV/ITGB3) integrins, and may inhibit platelet aggregation.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rm/1rmr_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rmr ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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This is the first structure of a biological homodimer of disintegrin. Disintegrins are a class of small (4-14 kDa) proteins that bind to transmembrane integrins selectively. The present molecule is the first homodimer that has been isolated from the venom of Echis carinatus. The monomeric chain contains 64 amino acid residues. The three-dimensional structure of schistatin has been determined by the multiple isomorphous replacement method. It has been refined to an R-factor of 0.190 using all the data to 2.5 A resolution. The two subunits of the disintegrin homodimer are related by a 2-fold crystallographic symmetry. Thus, the crystallographic asymmetric unit contains a monomer of disintegrin. The monomer folds into an up-down topology with three sets of antiparallel beta-strands. The structure is well ordered with four intramolecular disulfide bonds. the two monomers are firmly linked to each other through two intermolecular disulfide bridges at their N termini together with several other interactions. This structure has corrected the error in the disulfide bond pattern of the two intermolecular disulfide bridges that was reported earlier using chemical methods. Unique sequence and structural features of the schistatin monomers suggest that they have the ability to bind well with both alphaIIb beta3 and alphav beta3 integrins. The N termini anchored two chains of the dimer diverge away at their C termini exposing the Arg-Gly-Asp motif into opposite directions thus enhancing their binding efficiency to integrins. This is one of the unique features of the present disintegrin homodimer and seems to be responsible for the clustering of integrin molecules. The homodimer binds to integrins apparently with a higher affinity than the monomers and also plays a role in the signaling pathway.
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==About this Structure==
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Crystal structure of schistatin, a disintegrin homodimer from saw-scaled viper (Echis carinatus) at 2.5 A resolution.,Bilgrami S, Tomar S, Yadav S, Kaur P, Kumar J, Jabeen T, Sharma S, Singh TP J Mol Biol. 2004 Aug 13;341(3):829-37. PMID:15317139<ref>PMID:15317139</ref>
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1RMR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Echis_carinatus Echis carinatus]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1RMR OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of schistatin, a disintegrin homodimer from saw-scaled viper (Echis carinatus) at 2.5 A resolution., Bilgrami S, Tomar S, Yadav S, Kaur P, Kumar J, Jabeen T, Sharma S, Singh TP, J Mol Biol. 2004 Aug 13;341(3):829-37. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15317139 15317139]
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</div>
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[[Category: Echis carinatus]]
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<div class="pdbe-citations 1rmr" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Bilgrami, S.]]
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[[Category: Jabeen, T.]]
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[[Category: Kaur, P.]]
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[[Category: Kumar, J.]]
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[[Category: Sharma, S.]]
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[[Category: Singh, T.P.]]
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[[Category: Tomar, S.]]
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[[Category: Yadav, S.]]
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[[Category: disintegrin]]
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[[Category: echis carinatus]]
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[[Category: homodimer]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 01:43:06 2007''
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==See Also==
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*[[Disintegrin|Disintegrin]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Echis carinatus]]
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[[Category: Large Structures]]
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[[Category: Bilgrami S]]
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[[Category: Jabeen T]]
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[[Category: Kaur P]]
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[[Category: Kumar J]]
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[[Category: Sharma S]]
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[[Category: Singh TP]]
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[[Category: Tomar S]]
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[[Category: Yadav S]]

Current revision

Crystal Structure of Schistatin, a Disintegrin Homodimer from saw-scaled Viper (Echis carinatus) at 2.5 A resolution

PDB ID 1rmr

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