1ysh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:32, 9 October 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ysh.png|left|200px]]
 
-
<!--
+
==Localization and dynamic behavior of ribosomal protein L30e==
-
The line below this paragraph, containing "STRUCTURE_1ysh", creates the "Structure Box" on the page.
+
<SX load='1ysh' size='340' side='right' viewer='molstar' caption='[[1ysh]], [[Resolution|resolution]] 9.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ysh]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa], [https://en.wikipedia.org/wiki/Triticum_aestivum Triticum aestivum] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YSH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YSH FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 9.5&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ysh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ysh OCA], [https://pdbe.org/1ysh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ysh RCSB], [https://www.ebi.ac.uk/pdbsum/1ysh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ysh ProSAT]</span></td></tr>
-
{{STRUCTURE_1ysh| PDB=1ysh | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RL30_WHEAT RL30_WHEAT]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ys/1ysh_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ysh ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The ribosomal protein L30e is an indispensable component of the eukaryotic 80S ribosome, where it is part of the large (60S) ribosomal subunit. Here, we determined the localization of L30e in the cryo-EM map of the 80S wheat germ (wg) ribosome at a resolution of 9.5 A. L30e is part of the interface between large and small subunits, where it dynamically participates in the formation of the two intersubunit bridges eB9 and B4.
-
===Localization and dynamic behavior of ribosomal protein L30e===
+
Localization and dynamic behavior of ribosomal protein L30e.,Halic M, Becker T, Frank J, Spahn CM, Beckmann R Nat Struct Mol Biol. 2005 May;12(5):467-8. Epub 2005 May 1. PMID:15864315<ref>PMID:15864315</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 1ysh" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_15864315}}, adds the Publication Abstract to the page
+
*[[Ribosomal protein L30|Ribosomal protein L30]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15864315 is the PubMed ID number.
+
*[[Ribosomal protein S13|Ribosomal protein S13]]
-
-->
+
== References ==
-
{{ABSTRACT_PUBMED_15864315}}
+
<references/>
-
 
+
__TOC__
-
==About this Structure==
+
</SX>
-
1YSH is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa] and [http://en.wikipedia.org/wiki/Triticum_aestivum Triticum aestivum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YSH OCA].
+
[[Category: Large Structures]]
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:15864315</ref><references group="xtra"/>
+
[[Category: Oryza sativa]]
[[Category: Oryza sativa]]
 +
[[Category: Synthetic construct]]
[[Category: Triticum aestivum]]
[[Category: Triticum aestivum]]
-
[[Category: Becker, T.]]
+
[[Category: Becker T]]
-
[[Category: Beckmann, R.]]
+
[[Category: Beckmann R]]
-
[[Category: Frank, J.]]
+
[[Category: Frank J]]
-
[[Category: Halic, M.]]
+
[[Category: Halic M]]
-
[[Category: Spahn, C M.]]
+
[[Category: Spahn CM]]
-
[[Category: Rna]]
+
-
[[Category: Structural protein]]
+
-
[[Category: Structural protein/rna complex]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 28 21:06:57 2009''
+

Current revision

Localization and dynamic behavior of ribosomal protein L30e

1ysh, resolution 9.50Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ysh"
Personal tools