3f6y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3f6y" [edit=sysop:move=sysop])
Current revision (07:57, 9 October 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3f6y.png|left|200px]]
 
-
<!--
+
==Conformational Closure of the Catalytic Site of Human CD38 Induced by Calcium==
-
The line below this paragraph, containing "STRUCTURE_3f6y", creates the "Structure Box" on the page.
+
<StructureSection load='3f6y' size='340' side='right'caption='[[3f6y]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3f6y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F6Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F6Y FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
{{STRUCTURE_3f6y| PDB=3f6y | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f6y OCA], [https://pdbe.org/3f6y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f6y RCSB], [https://www.ebi.ac.uk/pdbsum/3f6y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f6y ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CD38_HUMAN CD38_HUMAN] Synthesizes cyclic ADP-ribose, a second messenger for glucose-induced insulin secretion. Also has cADPr hydrolase activity. Also moonlights as a receptor in cells of the immune system.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f6/3f6y_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3f6y ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
First identified on the surface of lymphoids as a type II transmembrane protein, CD38 has now been established to have dual functions not only as a receptor but also as a multifunctional enzyme,catalyzing the synthesis of and hydrolysis of a general calcium messenger molecule, cyclic ADP-ribose(cADPR). The receptorial functions of CD38 include the induction of cell adhesion, differentiation,apoptosis, and cytokine production upon antibody ligation. Here we determined the crystal structure of calcium-loaded human CD38 at 1.45 A resolution which reveals that CD38 undergoes dramatic structural changes to an inhibited conformation in the presence of calcium. The structural changes are highly localized and occur in only two regions. The first region is part of the active site and consists of residues 121-141.In the presence of calcium, W125 moves 5 A into the active site and forms hydrophobic interactions with W189. The movement closes the active site pocket and reduces entry of substrates, resulting in inhibition of the enzymatic activity. The structural role of calcium in inducing these conformational changes is readily visualized in the crystal structure. The other region that undergoes calcium-induced changes is at the receptor region, where a highly ordered helix is unraveled to a random coil. The results suggest a novel conformational coupling mechanism, whereby protein interaction targeted at the receptor region can effectively regulate the enzymatic activity of CD38.
-
===Conformational Closure of the Catalytic Site of Human CD38 Induced by Calcium===
+
Conformational Closure of the Catalytic Site of Human CD38 Induced by Calcium.,Liu Q, Graeff R, Kriksunov IA, Lam CM, Lee HC, Hao Q Biochemistry. 2008 Dec 30;47(52):13966-73. PMID:19117080<ref>PMID:19117080</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_19117080}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 3f6y" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 19117080 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_19117080}}
+
-
 
+
-
==About this Structure==
+
-
[[3f6y]] is a 1 chain structure of [[ADP-ribosyl cyclase 1]] and [[Cluster of Differentiation 38]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F6Y OCA].
+
==See Also==
==See Also==
-
*[[ADP-ribosyl cyclase 1]]
+
*[[Cluster of Differentiation CD38|Cluster of Differentiation CD38]]
-
*[[Cluster of Differentiation 38]]
+
== References ==
-
 
+
<references/>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:19117080</ref><references group="xtra"/>
+
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Graeff, R.]]
+
[[Category: Large Structures]]
-
[[Category: Hao, Q.]]
+
[[Category: Graeff R]]
-
[[Category: Kriksunov, I A.]]
+
[[Category: Hao Q]]
-
[[Category: Lam, C M.C.]]
+
[[Category: Kriksunov IA]]
-
[[Category: Lee, H C.]]
+
[[Category: Lam CMC]]
-
[[Category: Liu, Q.]]
+
[[Category: Lee HC]]
-
[[Category: Active site closure]]
+
[[Category: Liu Q]]
-
[[Category: Alternative splicing]]
+
-
[[Category: Calcium loaded structure]]
+
-
[[Category: Diabetes mellitus]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Inhibitory conformation]]
+
-
[[Category: Membrane]]
+
-
[[Category: Nad]]
+
-
[[Category: Polymorphism]]
+
-
[[Category: Receptor]]
+
-
[[Category: Signal-anchor]]
+
-
[[Category: Transmembrane]]
+

Current revision

Conformational Closure of the Catalytic Site of Human CD38 Induced by Calcium

PDB ID 3f6y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools