2p3y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:25, 17 October 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2p3y.png|left|200px]]
 
-
<!--
+
==Crystal structure of VPA0735 from Vibrio parahaemolyticus. NorthEast Structural Genomics target VpR109==
-
The line below this paragraph, containing "STRUCTURE_2p3y", creates the "Structure Box" on the page.
+
<StructureSection load='2p3y' size='340' side='right'caption='[[2p3y]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2p3y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P3Y FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2p3y| PDB=2p3y | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p3y OCA], [https://pdbe.org/2p3y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p3y RCSB], [https://www.ebi.ac.uk/pdbsum/2p3y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p3y ProSAT], [https://www.topsan.org/Proteins/NESGC/2p3y TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of VPA0735 from Vibrio parahaemolyticus. NorthEast Structural Genomics target VpR109===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q87I71_VIBPA Q87I71_VIBPA]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2P3Y is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3Y OCA].
+
Check<jmol>
-
[[Category: Single protein]]
+
<jmolCheckbox>
-
[[Category: Vibrio parahaemolyticus]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p3/2p3y_consurf.spt"</scriptWhenChecked>
-
[[Category: Acton, T B.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Baran, M C.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Cunningham, K.]]
+
</jmolCheckbox>
-
[[Category: Fang, Y.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p3y ConSurf].
-
[[Category: Forouhar, F.]]
+
<div style="clear:both"></div>
-
[[Category: Hunt, J F.]]
+
__TOC__
-
[[Category: Liu, J.]]
+
</StructureSection>
-
[[Category: Ma, L-C.]]
+
[[Category: Large Structures]]
-
[[Category: Montelione, G T.]]
+
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Acton TB]]
-
[[Category: Neely, H.]]
+
[[Category: Baran MC]]
-
[[Category: Rost, B.]]
+
[[Category: Cunningham K]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Fang Y]]
-
[[Category: Tong, L.]]
+
[[Category: Forouhar F]]
-
[[Category: Wang, D.]]
+
[[Category: Hunt JF]]
-
[[Category: Xia, R.]]
+
[[Category: Liu J]]
-
[[Category: Hypothetical protein]]
+
[[Category: Ma L-C]]
-
[[Category: Nesg]]
+
[[Category: Montelione GT]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: Neely H]]
-
[[Category: Protein structure initiative]]
+
[[Category: Rost B]]
-
[[Category: Psi-2]]
+
[[Category: Seetharaman J]]
-
[[Category: Structural genomic]]
+
[[Category: Tong L]]
-
 
+
[[Category: Wang D]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 06:27:40 2008''
+
[[Category: Xia R]]

Current revision

Crystal structure of VPA0735 from Vibrio parahaemolyticus. NorthEast Structural Genomics target VpR109

PDB ID 2p3y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2p3y"
Personal tools