2psm

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(New page: 200px<br /><applet load="2psm" size="350" color="white" frame="true" align="right" spinBox="true" caption="2psm, resolution 2.19&Aring;" /> '''Crystal structure of...)
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[[Image:2psm.jpg|left|200px]]<br /><applet load="2psm" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2psm, resolution 2.19&Aring;" />
 
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'''Crystal structure of Interleukin 15 in complex with Interleukin 15 receptor alpha'''<br />
 
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==Overview==
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==Crystal structure of Interleukin 15 in complex with Interleukin 15 receptor alpha==
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Interleukin (IL)-15 is a pleiotropic cytokine that plays a pivotal role in, both innate and adaptive immunity. IL-15 is unique among cytokines due to, its participation in a trans signaling mechanism in which IL-15Ralpha from, one subset of cells presents IL-15 to neighboring IL-2Rbeta/gamma(c), expressing cells. Here we present the crystal structure of IL-15 in, complex with the sushi domain of IL-15Ralpha. The structure reveals that, the alpha receptor-binding epitope of IL-15 adopts a unique conformation, which together with amino acid substitutions, permit specific interactions, with IL-15Ralpha that account for the exceptionally high affinity of the, IL-15*IL-15Ralpha complex. Interestingly, analysis of the topology of, IL-15 and IL-15Ralpha at the IL-15*IL-15Ralpha interface suggest that, IL-15 should be capable of participating in a cis signaling mechanism, similar to that of the related cytokine IL-2. Indeed, we present, biochemical data demonstrating that IL-15 is capable of efficiently, signaling in cis through IL-15Ralpha and IL-2Rbeta/gamma(c) expressed on, the surface of a single cell. Based on our data we propose that cis, presentation of IL-15 may be important in certain biological contexts, and, that flexibility of IL-15Ralpha permits IL-15 and its three receptor, components to be assembled identically at the ligand-receptor interface, whether IL-15 is presented in cis or trans. Finally, we have gained, insights into IL-15*IL-15Ralpha*IL-2Rbeta/gamma(c) quaternary complex, assembly through the use of molecular modeling.
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<StructureSection load='2psm' size='340' side='right'caption='[[2psm]], [[Resolution|resolution]] 2.19&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2psm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PSM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PSM FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.19&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2psm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2psm OCA], [https://pdbe.org/2psm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2psm RCSB], [https://www.ebi.ac.uk/pdbsum/2psm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2psm ProSAT], [https://www.topsan.org/Proteins/RSGI/2psm TOPSAN]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/IL15_MOUSE IL15_MOUSE] Cytokine that stimulates the proliferation of T-lymphocytes. Stimulation by IL-15 requires interaction of IL-15 with components of IL-2R, including IL-2R beta and probably IL-2R gamma but not IL-2R alpha.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ps/2psm_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2psm ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Interleukin (IL)-15 is a pleiotropic cytokine that plays a pivotal role in both innate and adaptive immunity. IL-15 is unique among cytokines due to its participation in a trans signaling mechanism in which IL-15 receptor alpha (IL-15Ralpha) from one subset of cells presents IL-15 to neighboring IL-2Rbeta/gammac-expressing cells. Here we present the crystal structure of IL-15 in complex with the sushi domain of IL-15Ralpha. The structure reveals that the alpha receptor-binding epitope of IL-15 adopts a unique conformation, which, together with amino acid substitutions, permits specific interactions with IL-15Ralpha that account for the exceptionally high affinity of the IL-15.IL-15Ralpha complex. Interestingly, analysis of the topology of IL-15 and IL-15Ralpha at the IL-15.IL-15Ralpha interface suggests that IL-15 should be capable of participating in a cis signaling mechanism similar to that of the related cytokine IL-2. Indeed, we present biochemical data demonstrating that IL-15 is capable of efficiently signaling in cis through IL-15Ralpha and IL-2Rbeta/gammac expressed on the surface of a single cell. Based on our data we propose that cis presentation of IL-15 may be important in certain biological contexts and that flexibility of IL-15Ralpha permits IL-15 and its three receptor components to be assembled identically at the ligand-receptor interface whether IL-15 is presented in cis or trans. Finally, we have gained insights into IL-15.IL-15Ralpha.IL-2Rbeta.gammac quaternary complex assembly through the use of molecular modeling.
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==About this Structure==
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Crystal Structure of the interleukin-15.interleukin-15 receptor alpha complex: insights into trans and cis presentation.,Olsen SK, Ota N, Kishishita S, Kukimoto-Niino M, Murayama K, Uchiyama H, Toyama M, Terada T, Shirouzu M, Kanagawa O, Yokoyama S J Biol Chem. 2007 Dec 21;282(51):37191-204. Epub 2007 Oct 18. PMID:17947230<ref>PMID:17947230</ref>
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2PSM is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] with <scene name='pdbligand=BAM:'>BAM</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PSM OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of the Interleukin-15 Interleukin-15 Receptor alpha complex: Insights into trans and cis presentation., Olsen SK, Ota N, Kishishita S, Kukimoto-Niino M, Murayama K, Uchiyama H, Toyama M, Terada T, Shirouzu M, Kanagawa O, Yokoyama S, J Biol Chem. 2007 Oct 18;. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17947230 17947230]
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</div>
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[[Category: Mus musculus]]
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<div class="pdbe-citations 2psm" style="background-color:#fffaf0;"></div>
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[[Category: Protein complex]]
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[[Category: Kanagawa, O.]]
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[[Category: Kishishita, S.]]
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[[Category: Kukimoto-Niino, M.]]
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[[Category: Murayama, K.]]
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[[Category: Olsen, S.K.]]
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[[Category: Ota, N.]]
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[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
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[[Category: Shirouzu, M.]]
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[[Category: Terada, T.]]
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[[Category: Yokoyama, S.]]
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[[Category: BAM]]
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[[Category: alternative splicing]]
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[[Category: cytokine]]
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[[Category: endoplasmic reticulum]]
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[[Category: glycoprotein]]
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[[Category: golgi apparatus]]
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[[Category: membrane]]
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[[Category: national project on protein structural and functional analyses]]
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[[Category: nppsfa]]
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[[Category: nucleus]]
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[[Category: phosphorylation]]
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[[Category: receptor]]
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[[Category: riken structural genomics/proteomics initiative]]
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[[Category: rsgi]]
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[[Category: secreted]]
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[[Category: structural genomics]]
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[[Category: sushi]]
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[[Category: transmembrane]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 11:18:32 2008''
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==See Also==
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*[[Interleukin 3D structures|Interleukin 3D structures]]
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*[[Interleukin receptor 3D structures|Interleukin receptor 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Mus musculus]]
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[[Category: Kanagawa O]]
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[[Category: Kishishita S]]
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[[Category: Kukimoto-Niino M]]
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[[Category: Murayama K]]
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[[Category: Olsen SK]]
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[[Category: Ota N]]
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[[Category: Shirouzu M]]
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[[Category: Terada T]]
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[[Category: Yokoyama S]]

Current revision

Crystal structure of Interleukin 15 in complex with Interleukin 15 receptor alpha

PDB ID 2psm

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