3dmi

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[[Image:3dmi.png|left|200px]]
 
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{{STRUCTURE_3dmi| PDB=3dmi | SCENE= }}
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==Crystallization and Structural Analysis of Cytochrome c6 from the Diatom Phaeodactylum tricornutum at 1.5 A resolution==
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<StructureSection load='3dmi' size='340' side='right'caption='[[3dmi]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3dmi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phaeodactylum_tricornutum Phaeodactylum tricornutum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DMI FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dmi OCA], [https://pdbe.org/3dmi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dmi RCSB], [https://www.ebi.ac.uk/pdbsum/3dmi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dmi ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8GTB5_PHATR Q8GTB5_PHATR]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dmi_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dmi ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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We determined for the first time the crystal structure of diatom cytochrome c(6) from Phaeodactylum tricornutum at 1.5 A resolution. The overall structure of the protein was classified as a class I c-type cytochrome. The physicochemical properties of the protein were examined by denaturation with guanidine hydrochloride and urea, and compared with those of other algal cytochrome c(6).
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===Crystallization and Structural Analysis of Cytochrome c6 from the Diatom Phaeodactylum tricornutum at 1.5 A resolution===
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Crystallization and structural analysis of cytochrome c(6) from the diatom Phaeodactylum tricornutum at 1.5 A resolution.,Akazaki H, Kawai F, Hosokawa M, Hama T, Chida H, Hirano T, Lim BK, Sakurai N, Hakamata W, Park SY, Nishio T, Oku T Biosci Biotechnol Biochem. 2009 Jan;73(1):189-91. Epub 2009 Jan 7. PMID:19129656<ref>PMID:19129656</ref>
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{{ABSTRACT_PUBMED_19129656}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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==About this Structure==
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<div class="pdbe-citations 3dmi" style="background-color:#fffaf0;"></div>
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[[3dmi]] is a 1 chain structure of [[Cytochrome c]] with sequence from [http://en.wikipedia.org/wiki/Phaeodactylum_tricornutum Phaeodactylum tricornutum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMI OCA].
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== References ==
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<references/>
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==See Also==
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__TOC__
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*[[Cytochrome c|Cytochrome c]]
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</StructureSection>
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[[Category: Large Structures]]
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==Reference==
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<ref group="xtra">PMID:019129656</ref><references group="xtra"/>
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[[Category: Phaeodactylum tricornutum]]
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[[Category: Akazaki, H.]]
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[[Category: Hakamata, W.]]
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[[Category: Hama, T.]]
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[[Category: Hirano, T.]]
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[[Category: Hosokawa, M.]]
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[[Category: Kawai, F.]]
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[[Category: Lim, B K.]]
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[[Category: Nishio, T.]]
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[[Category: Oku, T.]]
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[[Category: Park, S Y.]]
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[[Category: Sakurai, N.]]
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[[Category: Cytochrome c6]]
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[[Category: Electron transport]]
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[[Category: Phaeodactylum tricornutum]]
[[Category: Phaeodactylum tricornutum]]
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[[Category: Transit peptide]]
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[[Category: Akazaki H]]
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[[Category: Hakamata W]]
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[[Category: Hama T]]
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[[Category: Hirano T]]
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[[Category: Hosokawa M]]
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[[Category: Kawai F]]
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[[Category: Lim B-K]]
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[[Category: Nishio T]]
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[[Category: Oku T]]
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[[Category: Park S-Y]]
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[[Category: Sakurai N]]

Current revision

Crystallization and Structural Analysis of Cytochrome c6 from the Diatom Phaeodactylum tricornutum at 1.5 A resolution

PDB ID 3dmi

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