3rbh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:08, 17 October 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3rbh.png|left|200px]]
 
-
<!--
+
==Structure of alginate export protein AlgE from Pseudomonas aeruginosa==
-
The line below this paragraph, containing "STRUCTURE_3rbh", creates the "Structure Box" on the page.
+
<StructureSection load='3rbh' size='340' side='right'caption='[[3rbh]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3rbh]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RBH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RBH FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.301&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C8E:(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE'>C8E</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3rbh| PDB=3rbh | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rbh OCA], [https://pdbe.org/3rbh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rbh RCSB], [https://www.ebi.ac.uk/pdbsum/3rbh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rbh ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ALGE_PSEAE ALGE_PSEAE] Has non-porin-like, channel-forming properties and probably functions as an alginate permeability pore.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Pseudomonas aeruginosa is the predominant pathogen associated with chronic lung infection among cystic fibrosis patients. During colonization of the lung, P. aeruginosa converts to a mucoid phenotype characterized by the overproduction of the exopolysaccharide alginate. Secretion of newly synthesized alginate across the outer membrane is believed to occur through the outer membrane protein AlgE. Here we report the 2.3 A crystal structure of AlgE, which reveals a monomeric 18-stranded beta-barrel characterized by a highly electropositive pore constriction formed by an arginine-rich conduit that likely acts as a selectivity filter for the negatively charged alginate polymer. Interestingly, the pore constriction is occluded on either side by extracellular loop L2 and an unusually long periplasmic loop, T8. In halide efflux assays, deletion of loop T8 (DeltaT8-AlgE) resulted in a threefold increase in anion flux compared to the wild-type or DeltaL2-AlgE supporting the idea that AlgE forms a transport pathway through the membrane and suggesting that transport is regulated by T8. This model is further supported by in vivo experiments showing that complementation of an algE deletion mutant with DeltaT8-AlgE impairs alginate production. Taken together, these studies support a mechanism for exopolysaccharide export across the outer membrane that is distinct from the Wza-mediated translocation observed in canonical capsular polysaccharide export systems.
-
===Structure of alginate export protein AlgE from Pseudomonas aeruginosa===
+
Structural basis for alginate secretion across the bacterial outer membrane.,Whitney JC, Hay ID, Li C, Eckford PD, Robinson H, Amaya MF, Wood LF, Ohman DE, Bear CE, Rehm BH, Lynne Howell P Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13083-8. Epub 2011 Jul 21. PMID:21778407<ref>PMID:21778407</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_21778407}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 3rbh" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 21778407 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_21778407}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
[[3rbh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RBH OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:021778407</ref><references group="xtra"/>
+
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Amaya, M F.]]
+
[[Category: Amaya MF]]
-
[[Category: Bear, C E.]]
+
[[Category: Bear CE]]
-
[[Category: Eckford, P D.]]
+
[[Category: Eckford PD]]
-
[[Category: Hay, I D.]]
+
[[Category: Hay ID]]
-
[[Category: Howell, P L.]]
+
[[Category: Howell PL]]
-
[[Category: Li, C.]]
+
[[Category: Li C]]
-
[[Category: Ohman, D E.]]
+
[[Category: Ohman DE]]
-
[[Category: Rehm, B H.]]
+
[[Category: Rehm BH]]
-
[[Category: Robinson, H.]]
+
[[Category: Robinson H]]
-
[[Category: Whitney, J C.]]
+
[[Category: Whitney JC]]
-
[[Category: Wood, L F.]]
+
[[Category: Wood LF]]
-
[[Category: Alginate export]]
+
-
[[Category: Beta-barrel]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Transport protein]]
+

Current revision

Structure of alginate export protein AlgE from Pseudomonas aeruginosa

PDB ID 3rbh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools