6eiy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:55, 17 October 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of KDM5B in complex with KDOPZ000034a.==
==Crystal structure of KDM5B in complex with KDOPZ000034a.==
-
<StructureSection load='6eiy' size='340' side='right' caption='[[6eiy]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
+
<StructureSection load='6eiy' size='340' side='right'caption='[[6eiy]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6eiy]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EIY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6EIY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6eiy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EIY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6EIY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=B6W:2-chloranyl-~{N}-[2-[4-(3-cyano-7-oxidanylidene-6-propan-2-yl-4~{H}-pyrazolo[1,5-a]pyrimidin-5-yl)pyrazol-1-yl]ethyl]ethanamide'>B6W</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6eiy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6eiy OCA], [http://pdbe.org/6eiy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6eiy RCSB], [http://www.ebi.ac.uk/pdbsum/6eiy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6eiy ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B6W:2-chloranyl-~{N}-[2-[4-(3-cyano-7-oxidanylidene-6-propan-2-yl-4~{H}-pyrazolo[1,5-a]pyrimidin-5-yl)pyrazol-1-yl]ethyl]ethanamide'>B6W</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6eiy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6eiy OCA], [https://pdbe.org/6eiy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6eiy RCSB], [https://www.ebi.ac.uk/pdbsum/6eiy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6eiy ProSAT]</span></td></tr>
</table>
</table>
-
== Function ==
+
 
-
[[http://www.uniprot.org/uniprot/KDM5B_HUMAN KDM5B_HUMAN]] Histone demethylase that demethylates 'Lys-4' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-9' or H3 'Lys-27'. Demethylates trimethylated, dimethylated and monomethylated H3 'Lys-4'. Acts as a transcriptional corepressor for FOXG1B and PAX9. Favors the proliferation of breast cancer cells by repressing tumor suppressor genes such as BRCA1 and HOXA5. In contrast, may act as a tumor suppressor for melanoma.<ref>PMID:12657635</ref> <ref>PMID:16645588</ref> <ref>PMID:17320161</ref> <ref>PMID:17363312</ref>
+
==See Also==
-
== References ==
+
*[[Lysine-specific histone demethylase 3D structures|Lysine-specific histone demethylase 3D structures]]
-
<references/>
+
*[[Retinoblastoma-binding protein 3D structures|Retinoblastoma-binding protein 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Arrowsmith, C H]]
+
[[Category: Homo sapiens]]
-
[[Category: Bountra, C]]
+
[[Category: Large Structures]]
-
[[Category: Burgess-Brown, N A]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Delft, F von]]
+
[[Category: Bountra C]]
-
[[Category: Edwards, A]]
+
[[Category: Burgess-Brown NA]]
-
[[Category: Huber, K]]
+
[[Category: Edwards A]]
-
[[Category: Kupinska, K]]
+
[[Category: Huber K]]
-
[[Category: Newman, J A]]
+
[[Category: Kupinska K]]
-
[[Category: Oppermann, U]]
+
[[Category: Newman JA]]
-
[[Category: Ruda, G F]]
+
[[Category: Oppermann U]]
-
[[Category: Srikannathasan, V]]
+
[[Category: Ruda GF]]
-
[[Category: Strain-Damerell, C]]
+
[[Category: Srikannathasan V]]
-
[[Category: Szykowska, A]]
+
[[Category: Strain-Damerell C]]
-
[[Category: Vazquez-Rodriguez, S A]]
+
[[Category: Szykowska A]]
-
[[Category: Wright, M]]
+
[[Category: Vazquez-Rodriguez SA]]
-
[[Category: Kdm5b lysine specific demethylase]]
+
[[Category: Wright M]]
-
[[Category: Oxidoreductase]]
+
[[Category: Von Delft F]]

Current revision

Crystal structure of KDM5B in complex with KDOPZ000034a.

PDB ID 6eiy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools