User:Jaime Prilusky/Test/superposition

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< User:Jaime Prilusky(Difference between revisions)
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Current revision (04:05, 23 October 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 2: Line 2:
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<jmol>
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<scene name='10/1051455/1crn_121/1'>1crn {1 2 1}</scene>
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<jmolButton>
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<script>
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<scene name='10/1051455/Fig_07a_3/2'>/scripts/10/1056692/Fig_07a_3/2</scene>
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zap;
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load files "/wiki/images/8/8e/1agx_r.pdb" "/wiki/images/7/74/1agx.pdb";
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select all; wireframe off; cpk off;
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select protein and 1.1; cartoon; color palegreen; center selected
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select protein and 2.1; cartoon; color cornflowerblue;
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model 0;
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</script>
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<text>just load two structures</text>
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</jmolButton>
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</jmol>
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<scene name='10/1051455/3rec/5'>caption added on old scene</scene> (CNS)
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<!-- /1050894/ /1055499/ /1056673/ /1056692/ -->
<jmol>
<jmol>
<jmolButton>
<jmolButton>
<script>
<script>
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zap;
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zap;
load files "/wiki/images/8/8e/1agx_r.pdb" "/wiki/images/7/74/1agx.pdb";
load files "/wiki/images/8/8e/1agx_r.pdb" "/wiki/images/7/74/1agx.pdb";
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compare {2.1} {1.1} subset {*.CA} rotate translate;
 
select all; wireframe off; cpk off;
select all; wireframe off; cpk off;
select protein and 1.1; cartoon; color palegreen; center selected
select protein and 1.1; cartoon; color palegreen; center selected
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model 0;
model 0;
</script>
</script>
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<text>load and align C alpha</text>
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<text>load two structures</text>
</jmolButton>
</jmolButton>
</jmol>
</jmol>
- 
<jmol>
<jmol>
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<text>structure 1</text>
<text>structure 1</text>
</jmolButton>
</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
<jmolButton>
<script>!exit; model 2</script>
<script>!exit; model 2</script>
<text>structure 2</text>
<text>structure 2</text>
</jmolButton>
</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
<jmolButton>
<script>!exit; model 0</script>
<script>!exit; model 0</script>
<text>both</text>
<text>both</text>
</jmolButton>
</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
<jmolButton>
<script>animation mode loop; animation on</script>
<script>animation mode loop; animation on</script>
<text>animate</text>
<text>animate</text>
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</jmolButton>
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</jmol>
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 +
 +
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== Test ==
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<jmol>
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<jmolButton>
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<script>
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if (sf!='8c4ab271d907ea46ee5b7043bfa8c37d') {
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load /*file*/"/cgi-bin/getfrozenstructure?8c4ab271d907ea46ee5b7043bfa8c37d";
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sf = '8c4ab271d907ea46ee5b7043bfa8c37d';
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script /wiki/extensions/Proteopedia/spt/initialview02v4.spt; color structure; spin off;
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}
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model 1;
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script "/cgi-bin/pprcpt?The structure of mutant C155S [[8vo1]] is strikingly similar to the WT apo_PR10-10 bound with papaverine [[8vo3]].";
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</script>
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<text>mutant C155S</text>
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</jmolButton>
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<jmolButton>
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<script>
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if (sf!='8c4ab271d907ea46ee5b7043bfa8c37d') {
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load /*file*/"/cgi-bin/getfrozenstructure?8c4ab271d907ea46ee5b7043bfa8c37d";
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sf = '8c4ab271d907ea46ee5b7043bfa8c37d';
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script /wiki/extensions/Proteopedia/spt/initialview02v4.spt; color structure; spin off;
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}
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model 2;
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script "/cgi-bin/pprcpt?The structure of mutant C59S [[8vo2]] is strikingly similar to the WT apo_PR10-10 bound with papaverine [[8vo3]].";
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</script>
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<text>mutant C59S</text>
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</jmolButton>
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<jmolButton>
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<script>
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if (sf!='8c4ab271d907ea46ee5b7043bfa8c37d') {
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load /*file*/"/cgi-bin/getfrozenstructure?8c4ab271d907ea46ee5b7043bfa8c37d";
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sf = '8c4ab271d907ea46ee5b7043bfa8c37d';
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script /wiki/extensions/Proteopedia/spt/initialview02v4.spt; color structure; spin off;
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}
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model 3;
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script "/cgi-bin/pprcpt?The structure of the WT apo_PR10-10 bound with papaverine [[8vo3]].";
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</script>
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<text>WT bound with papaverine</text>
</jmolButton>
</jmolButton>
</jmol>
</jmol>
</StructureSection>
</StructureSection>
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 +
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<!-- .
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<jmol>
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<jmolButton>
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<script>
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zap;
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load files "/wiki/images/8/8e/1agx_r.pdb" "/wiki/images/7/74/1agx.pdb";
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compare {2.1} {1.1} subset {*.CA} rotate translate;
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select all; wireframe off; cpk off;
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select protein and 1.1; cartoon; color palegreen; center selected
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select protein and 2.1; cartoon; color cornflowerblue;
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model 0;
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</script>
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<text>load and align C alpha</text>
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</jmolButton>
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</jmol>
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-->

Current revision

Drag the structure with the mouse to rotate


Proteopedia Page Contributors and Editors (what is this?)

Jaime Prilusky

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