2ywc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:07, 23 October 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ywc.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of GMP synthetase from Thermus thermophilus in complex with XMP==
-
The line below this paragraph, containing "STRUCTURE_2ywc", creates the "Structure Box" on the page.
+
<StructureSection load='2ywc' size='340' side='right'caption='[[2ywc]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ywc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YWC FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=XMP:XANTHOSINE-5-MONOPHOSPHATE'>XMP</scene></td></tr>
-
{{STRUCTURE_2ywc| PDB=2ywc | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ywc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywc OCA], [https://pdbe.org/2ywc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ywc RCSB], [https://www.ebi.ac.uk/pdbsum/2ywc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywc ProSAT], [https://www.topsan.org/Proteins/RSGI/2ywc TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GUAA_THET8 GUAA_THET8] Catalyzes the synthesis of GMP from XMP (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywc_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ywc ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of GMP synthetase from Thermus thermophilus in complex with XMP'''
+
==See Also==
-
 
+
*[[GMP synthase|GMP synthase]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2YWC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWC OCA].
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Thermus thermophilus]]
+
[[Category: Baba S]]
-
[[Category: Baba, S.]]
+
[[Category: Kanagawa M]]
-
[[Category: Kanagawa, M.]]
+
[[Category: Kawai G]]
-
[[Category: Kawai, G.]]
+
[[Category: Kuramitsu S]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Sampei G]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Yokoyama S]]
-
[[Category: Sampei, G.]]
+
-
[[Category: Yokoyama, S.]]
+
-
[[Category: Atp binding]]
+
-
[[Category: Gmp synthetase]]
+
-
[[Category: Ligase]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Purine nucleotide biosynthetic pathway]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Xmp binding]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 19:34:54 2008''
+

Current revision

Crystal structure of GMP synthetase from Thermus thermophilus in complex with XMP

PDB ID 2ywc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ywc"
Personal tools