1jnn

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[[Image:1jnn.gif|left|200px]]
 
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==Crystal Structure of Fab-Estradiol Complexes==
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The line below this paragraph, containing "STRUCTURE_1jnn", creates the "Structure Box" on the page.
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<StructureSection load='1jnn' size='340' side='right'caption='[[1jnn]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1jnn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JNN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JNN FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EST:ESTRADIOL'>EST</scene></td></tr>
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{{STRUCTURE_1jnn| PDB=1jnn | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jnn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jnn OCA], [https://pdbe.org/1jnn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jnn RCSB], [https://www.ebi.ac.uk/pdbsum/1jnn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jnn ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q7TS98_MOUSE Q7TS98_MOUSE]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jn/1jnn_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jnn ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Subtle modulation of antibody-binding properties by protein engineering often lies with an accurate structural and energetic description of how an antigen is recognised. Thus, with the intent to increase the affinity and add a bias in favour of natural estradiol compared with its chemically modified immunogen, we have determined the crystal structure of two anti-estradiol monoclonal antibodies, 10G6D6 and 17E12E5. Although generated against the same estradiol derivative, these antibodies share little sequence identity, which is reflected in dissimilar binding pockets and in different positioning of the steroid. In both antibodies the characteristic 17-hydroxyl group is buried deeply at the bottom of hydrophobic pockets and stabilised by hydrogen bonds. Apart from this similarity, the steroid is oriented differently in the respective binding pockets. The high specificity of both antibodies has been mapped out, and even closely related steroids show low cross-reactivity. The structural studies of the complex formed between 10G6D6 and 6-CMO-estradiol have identified contacts between the 6-CMO coupling linker and an arginine residue from the heavy chain CDR2 segment. This segment is now being targeted by random mutagenesis to select mutants with a preference for natural estradiol compared to the branched hapten.
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'''Crystal Structure of Fab-Estradiol Complexes'''
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Highly specific anti-estradiol antibodies: structural characterisation and binding diversity.,Monnet C, Bettsworth F, Stura EA, Le Du MH, Menez R, Derrien L, Zinn-Justin S, Gilquin B, Sibai G, Battail-Poirot N, Jolivet M, Menez A, Arnaud M, Ducancel F, Charbonnier JB J Mol Biol. 2002 Jan 25;315(4):699-712. PMID:11812141<ref>PMID:11812141</ref>
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==Overview==
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Subtle modulation of antibody-binding properties by protein engineering often lies with an accurate structural and energetic description of how an antigen is recognised. Thus, with the intent to increase the affinity and add a bias in favour of natural estradiol compared with its chemically modified immunogen, we have determined the crystal structure of two anti-estradiol monoclonal antibodies, 10G6D6 and 17E12E5. Although generated against the same estradiol derivative, these antibodies share little sequence identity, which is reflected in dissimilar binding pockets and in different positioning of the steroid. In both antibodies the characteristic 17-hydroxyl group is buried deeply at the bottom of hydrophobic pockets and stabilised by hydrogen bonds. Apart from this similarity, the steroid is oriented differently in the respective binding pockets. The high specificity of both antibodies has been mapped out, and even closely related steroids show low cross-reactivity. The structural studies of the complex formed between 10G6D6 and 6-CMO-estradiol have identified contacts between the 6-CMO coupling linker and an arginine residue from the heavy chain CDR2 segment. This segment is now being targeted by random mutagenesis to select mutants with a preference for natural estradiol compared to the branched hapten.
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==About this Structure==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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1JNN is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JNN OCA].
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</div>
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<div class="pdbe-citations 1jnn" style="background-color:#fffaf0;"></div>
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==Reference==
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==See Also==
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Highly specific anti-estradiol antibodies: structural characterisation and binding diversity., Monnet C, Bettsworth F, Stura EA, Le Du MH, Menez R, Derrien L, Zinn-Justin S, Gilquin B, Sibai G, Battail-Poirot N, Jolivet M, Menez A, Arnaud M, Ducancel F, Charbonnier JB, J Mol Biol. 2002 Jan 25;315(4):699-712. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11812141 11812141]
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*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Protein complex]]
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[[Category: Arnaud M]]
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[[Category: Arnaud, M.]]
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[[Category: Battail-Poirot N]]
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[[Category: Battail-Poirot, N.]]
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[[Category: Bettsworth F]]
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[[Category: Bettsworth, F.]]
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[[Category: Charbonnier JB]]
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[[Category: Charbonnier, J B.]]
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[[Category: Derrien L]]
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[[Category: Derrien, L.]]
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[[Category: Ducancel F]]
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[[Category: Du, M H.Le.]]
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[[Category: Gilquin B]]
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[[Category: Ducancel, F.]]
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[[Category: Jolivet M]]
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[[Category: Gilquin, B.]]
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[[Category: Le Du M-H]]
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[[Category: Jolivet, M.]]
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[[Category: Menez A]]
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[[Category: Menez, A.]]
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[[Category: Menez R]]
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[[Category: Menez, R.]]
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[[Category: Monnet C]]
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[[Category: Monnet, C.]]
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[[Category: Sibai G]]
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[[Category: Sibai, G.]]
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[[Category: Stura EA]]
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[[Category: Stura, E A.]]
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[[Category: Zinn-Justin S]]
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[[Category: Zinn-Justin, S.]]
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[[Category: Antibody-hapten complex]]
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[[Category: Estradiol]]
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[[Category: Igg fold]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 21:27:50 2008''
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Current revision

Crystal Structure of Fab-Estradiol Complexes

PDB ID 1jnn

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