1p3e

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{{Seed}}
 
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[[Image:1p3e.png|left|200px]]
 
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==Structure of Glu endopeptidase in complex with MPD==
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The line below this paragraph, containing "STRUCTURE_1p3e", creates the "Structure Box" on the page.
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<StructureSection load='1p3e' size='340' side='right'caption='[[1p3e]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1p3e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_intermedius Bacillus intermedius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P3E FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.72&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
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{{STRUCTURE_1p3e| PDB=1p3e | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p3e OCA], [https://pdbe.org/1p3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p3e RCSB], [https://www.ebi.ac.uk/pdbsum/1p3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p3e ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9EXR9_BACIN Q9EXR9_BACIN]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p3/1p3e_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1p3e ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Extracellular glutamyl endopeptidase from Bacillus intermedius (BIEP) is a chymotrypsin-like serine protease which cleaves the peptide bond on the carboxyl side of glutamic acid. Its three-dimensional structure was determined for C222(1) and C2 crystal forms of BIEP to 1.5 and 1.75 A resolution, respectively. The topology of BIEP diverges from the most common chymotrypsin architecture, because one of the domains consists of a beta-sandwich consisting of two antiparallel beta-sheets and two helices. In the C2 crystals, a 2-methyl-2,4-pentanediol (MPD) molecule was found in the substrate binding site, mimicking a glutamic acid. This enabled the identification of the residues involved in the substrate recognition. The presence of the MPD molecule causes a change in the active site; the interaction between two catalytic residues (His47 and Ser171) is disrupted. The N-terminal end of the enzyme is involved in the formation of the substrate binding pocket. This indicates a direct relation between zymogen activation and substrate charge compensation.
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===Structure of Glu endopeptidase in complex with MPD===
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The crystal structure of glutamyl endopeptidase from Bacillus intermedius reveals a structural link between zymogen activation and charge compensation.,Meijers R, Blagova EV, Levdikov VM, Rudenskaya GN, Chestukhina GG, Akimkina TV, Kostrov SV, Lamzin VS, Kuranova IP Biochemistry. 2004 Mar 16;43(10):2784-91. PMID:15005613<ref>PMID:15005613</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_15005613}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1p3e" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 15005613 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15005613}}
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__TOC__
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</StructureSection>
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==About this Structure==
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1P3E is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_intermedius Bacillus intermedius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P3E OCA].
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==Reference==
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<ref group="xtra">PMID:15005613</ref><references group="xtra"/>
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[[Category: Bacillus intermedius]]
[[Category: Bacillus intermedius]]
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[[Category: Akimkina, T V.]]
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[[Category: Large Structures]]
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[[Category: Blagova, E V.]]
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[[Category: Akimkina TV]]
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[[Category: Chestukhina, G G.]]
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[[Category: Blagova EV]]
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[[Category: Kostrov, S V.]]
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[[Category: Chestukhina GG]]
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[[Category: Kuranova, I P.]]
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[[Category: Kostrov SV]]
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[[Category: Lamzin, V S.]]
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[[Category: Kuranova IP]]
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[[Category: Levdikov, V M.]]
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[[Category: Lamzin VS]]
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[[Category: Meijers, R.]]
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[[Category: Levdikov VM]]
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[[Category: Rudenskaya, G N.]]
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[[Category: Meijers R]]
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[[Category: Glu specific]]
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[[Category: Rudenskaya GN]]
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[[Category: Serine protease]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 14:23:39 2009''
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Current revision

Structure of Glu endopeptidase in complex with MPD

PDB ID 1p3e

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