1xj5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:37, 30 October 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='1xj5' size='340' side='right'caption='[[1xj5]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
<StructureSection load='1xj5' size='340' side='right'caption='[[1xj5]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1xj5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1XJ5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1xj5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XJ5 FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AT1G23820 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xj5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj5 OCA], [https://pdbe.org/1xj5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xj5 RCSB], [https://www.ebi.ac.uk/pdbsum/1xj5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xj5 ProSAT], [https://www.topsan.org/Proteins/CESG/1xj5 TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1xj5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj5 OCA], [http://pdbe.org/1xj5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xj5 RCSB], [http://www.ebi.ac.uk/pdbsum/1xj5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xj5 ProSAT], [http://www.topsan.org/Proteins/CESG/1xj5 TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SPDS1_ARATH SPDS1_ARATH]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 14: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xj/1xj5_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xj/1xj5_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 24: Line 25:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Arath]]
+
[[Category: Arabidopsis thaliana]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Spermidine synthase]]
+
[[Category: Allard STM]]
-
[[Category: Allard, S T.M]]
+
[[Category: Bingman CA]]
-
[[Category: Bingman, C A]]
+
[[Category: Bitto E]]
-
[[Category: Bitto, E]]
+
[[Category: Phillips Jr GN]]
-
[[Category: Structural genomic]]
+
[[Category: Smith DW]]
-
[[Category: Phillips, G N]]
+
[[Category: Wesenberg GE]]
-
[[Category: Smith, D W]]
+
-
[[Category: Wesenberg, G E]]
+
-
[[Category: At1g23820]]
+
-
[[Category: Cesg]]
+
-
[[Category: Polyamine]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Putrescine aminopropyl transferase]]
+
-
[[Category: Spds1]]
+
-
[[Category: Transferase]]
+

Current revision

X-RAY STRUCTURE OF SPERMIDINE SYNTHASE FROM ARABIDOPSIS THALIANA GENE AT1G23820

PDB ID 1xj5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools