2o2b

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(New page: 200px<br /><applet load="2o2b" size="350" color="white" frame="true" align="right" spinBox="true" caption="2o2b, resolution 1.94&Aring;" /> '''Spectroscopic and St...)
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[[Image:2o2b.gif|left|200px]]<br /><applet load="2o2b" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2o2b, resolution 1.94&Aring;" />
 
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'''Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-I Complex'''<br />
 
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==Overview==
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==Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-I Complex==
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This study reports the influence of halogens on fluorescence properties of, the Aequorea victoria Green Fluorescent Protein variant S65T/T203Y, (E2GFP). Halide binding forms a specific non-fluorescent complex, generating a substantial drop of the fluorescence via static quenching., Spectroscopic analysis under different solution conditions reveals high, halogen affinity, which is strongly dependent on the pH. This evidences, the presence in E(2)GFP of interacting binding sites for halide ions and, for protons. Thermodynamic link and cooperative interaction are assessed, demonstrating that binding of one halide ion is associated with the, binding of one proton in a cooperative fashion with the formation, in the, pH range 4.5-10, of a single fully protonated E(2)GFP.halogen complex. In, order to resolve the structural determinants of E(2)GFP sensitivity to, halogens high-resolution crystallographic structures were obtained for the, halide-free and I(-), Br(-) and Cl(-) bound E(2)GFP. Remarkably the first, high-resolution (1.4 A) crystallographic structure of a chloride-bound GFP, is reported. The chloride ion occupies a specific and unique binding, pocket in direct contact (3.4 A) with the chromophore imidazolidinone, aromatic ring. Unanticipated flexibility, strongly modulated by halide ion, interactions, is observed in the region surrounding the chromophore., Furthermore molecular dynamics simulations identified E222 residue (along, with the chromophore Y66 residue) being in the protonated state when, E(2)GFP.halogen complex is formed. The impact of these results on, high-sensitivity biosensor design will be discussed.
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<StructureSection load='2o2b' size='340' side='right'caption='[[2o2b]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2o2b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O2B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O2B FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.94&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o2b OCA], [https://pdbe.org/2o2b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o2b RCSB], [https://www.ebi.ac.uk/pdbsum/2o2b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o2b ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o2/2o2b_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o2b ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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This study reports the influence of halogens on fluorescence properties of the Aequorea victoria Green Fluorescent Protein variant S65T/T203Y (E(2)GFP). Halide binding forms a specific nonfluorescent complex generating a substantial drop of the fluorescence via static quenching. Spectroscopic analysis under different solution conditions reveals high halogen affinity, which is strongly dependent on the pH. This evidences the presence in E(2)GFP of interacting binding sites for halide ions and for protons. Thermodynamic link and cooperative interaction are assessed demonstrating that binding of one halide ion is associated with the binding of one proton in a cooperative fashion with the formation, in the pH range 4.5-10, of a single fully protonated E(2)GFP.halogen complex. To resolve the structural determinants of E(2)GFP sensitivity to halogens, high-resolution crystallographic structures were obtained for the halide-free and I(-), Br(-), and Cl(-) bound E(2)GFP. Remarkably the first high-resolution (1.4 A) crystallographic structure of a chloride-bound GFP is reported. The chloride ion occupies a specific and unique binding pocket in direct contact (3.4 A) with the chromophore imidazolidinone aromatic ring. Unanticipated flexibility, strongly modulated by halide ion interactions, is observed in the region surrounding the chromophore. Furthermore molecular dynamics simulations identified E222 residue (along with the chromophore Y66 residue) being in the protonated state when E(2)GFP.halogen complex is formed. The impact of these results on high-sensitivity biosensor design will be discussed.
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==About this Structure==
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Spectroscopic and structural study of proton and halide ion cooperative binding to gfp.,Arosio D, Garau G, Ricci F, Marchetti L, Bizzarri R, Nifosi R, Beltram F Biophys J. 2007 Jul 1;93(1):232-44. Epub 2007 Apr 13. PMID:17434942<ref>PMID:17434942</ref>
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2O2B is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria] with <scene name='pdbligand=IOD:'>IOD</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O2B OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Spectroscopic and Structural study of Proton and Halide ion cooperative binding to GFP., Arosio DP, Garau G, Ricci F, Marchetti L, Bizzarri R, Nifosi R, Beltram F, Biophys J. 2007 Apr 13;. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17434942 17434942]
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</div>
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[[Category: Aequorea victoria]]
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<div class="pdbe-citations 2o2b" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Garau, G.]]
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[[Category: IOD]]
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[[Category: bioluminescence]]
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[[Category: bromide]]
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[[Category: e2]]
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[[Category: fluorescent chloride]]
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[[Category: gfp]]
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[[Category: green fluorescent protein]]
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[[Category: halogen]]
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[[Category: iodine]]
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[[Category: luminescence]]
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[[Category: photoactive protein]]
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[[Category: variant]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 14:47:44 2008''
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==See Also==
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*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Aequorea victoria]]
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[[Category: Large Structures]]
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[[Category: Garau G]]

Current revision

Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-I Complex

PDB ID 2o2b

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