We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

2qlz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:33, 30 October 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal Structure of Transcription Factor PF0095 from Pyrococcus furiosus==
==Crystal Structure of Transcription Factor PF0095 from Pyrococcus furiosus==
-
<StructureSection load='2qlz' size='340' side='right' caption='[[2qlz]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='2qlz' size='340' side='right'caption='[[2qlz]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2qlz]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QLZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2QLZ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2qlz]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QLZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QLZ FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2quf|2quf]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qlz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qlz OCA], [http://pdbe.org/2qlz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2qlz RCSB], [http://www.ebi.ac.uk/pdbsum/2qlz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2qlz ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qlz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qlz OCA], [https://pdbe.org/2qlz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qlz RCSB], [https://www.ebi.ac.uk/pdbsum/2qlz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qlz ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8U4J2_PYRFU Q8U4J2_PYRFU]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 13: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ql/2qlz_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ql/2qlz_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pyrococcus furiosus]]
[[Category: Pyrococcus furiosus]]
-
[[Category: Lipscomb, G L]]
+
[[Category: Lipscomb GL]]
-
[[Category: Rose, J P]]
+
[[Category: Rose JP]]
-
[[Category: Scott, R A]]
+
[[Category: Scott RA]]
-
[[Category: Wang, B C]]
+
[[Category: Wang BC]]
-
[[Category: Yang, H]]
+
[[Category: Yang H]]
-
[[Category: Transcription]]
+
-
[[Category: Transcription factor]]
+

Current revision

Crystal Structure of Transcription Factor PF0095 from Pyrococcus furiosus

PDB ID 2qlz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools