2qor

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:34, 30 October 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qor.jpg|left|200px]]<br /><applet load="2qor" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2qor, resolution 1.800&Aring;" />
 
-
'''Crystal structure of Plasmodium vivax guanylate kinase'''<br />
 
-
==About this Structure==
+
==Crystal structure of Plasmodium vivax guanylate kinase==
-
2QOR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax] with <scene name='pdbligand=5GP:'>5GP</scene> and <scene name='pdbligand=POP:'>POP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Guanylate_kinase Guanylate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.8 2.7.4.8] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QOR OCA].
+
<StructureSection load='2qor' size='340' side='right'caption='[[2qor]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
[[Category: Guanylate kinase]]
+
== Structural highlights ==
-
[[Category: Plasmodium vivax]]
+
<table><tr><td colspan='2'>[[2qor]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QOR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QOR FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
[[Category: Merritt, E A.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
-
[[Category: SGPP, Structural Genomics of Pathogenic Protozoa Consortium.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qor FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qor OCA], [https://pdbe.org/2qor PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qor RCSB], [https://www.ebi.ac.uk/pdbsum/2qor PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qor ProSAT]</span></td></tr>
-
[[Category: Trong, I Le.]]
+
</table>
-
[[Category: 5GP]]
+
== Function ==
-
[[Category: POP]]
+
[https://www.uniprot.org/uniprot/A5K709_PLAVS A5K709_PLAVS]
-
[[Category: kinase]]
+
== Evolutionary Conservation ==
-
[[Category: phosphotransferase]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: protein structure initiative]]
+
Check<jmol>
-
[[Category: psi]]
+
<jmolCheckbox>
-
[[Category: purine metabolism]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qo/2qor_consurf.spt"</scriptWhenChecked>
-
[[Category: sgpp]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: structural genomics]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: structural genomics of pathogenic protozoa consortium]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qor ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:41:03 2008''
+
==See Also==
 +
*[[Guanylate kinase 3D structures|Guanylate kinase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Plasmodium vivax]]
 +
[[Category: Le Trong I]]
 +
[[Category: Merritt EA]]

Current revision

Crystal structure of Plasmodium vivax guanylate kinase

PDB ID 2qor

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools