2rfk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:38, 30 October 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Substrate RNA Positioning in the Archaeal H/ACA Ribonucleoprotein Complex==
==Substrate RNA Positioning in the Archaeal H/ACA Ribonucleoprotein Complex==
-
<StructureSection load='2rfk' size='340' side='right' caption='[[2rfk]], [[Resolution|resolution]] 2.87&Aring;' scene=''>
+
<StructureSection load='2rfk' size='340' side='right'caption='[[2rfk]], [[Resolution|resolution]] 2.87&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2rfk]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RFK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RFK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2rfk]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RFK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RFK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.87&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rfk OCA], [http://pdbe.org/2rfk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2rfk RCSB], [http://www.ebi.ac.uk/pdbsum/2rfk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2rfk ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rfk OCA], [https://pdbe.org/2rfk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rfk RCSB], [https://www.ebi.ac.uk/pdbsum/2rfk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rfk ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/TRUB_PYRFU TRUB_PYRFU]] Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs (By similarity). [[http://www.uniprot.org/uniprot/NOP10_PYRFU NOP10_PYRFU]] Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA (By similarity).
+
[https://www.uniprot.org/uniprot/TRUB_PYRFU TRUB_PYRFU] Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 14: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rf/2rfk_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rf/2rfk_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 30: Line 31:
==See Also==
==See Also==
-
*[[Ribosome biogenesis protein|Ribosome biogenesis protein]]
+
*[[Guide-independent Pseudouridine synthase|Guide-independent Pseudouridine synthase]]
-
*[[TRNA pseudouridine synthase|TRNA pseudouridine synthase]]
+
*[[Pseudouridine synthase 3D structures|Pseudouridine synthase 3D structures]]
 +
*[[Ribosome biogenesis protein 3D structures|Ribosome biogenesis protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 43587]]
+
[[Category: Large Structures]]
-
[[Category: Li, H]]
+
[[Category: Pyrococcus furiosus]]
-
[[Category: Liang, B]]
+
[[Category: Li H]]
-
[[Category: Structural genomic]]
+
[[Category: Liang B]]
-
[[Category: Terns, M P]]
+
[[Category: Terns MP]]
-
[[Category: Terns, R M]]
+
[[Category: Terns RM]]
-
[[Category: Xue, S]]
+
[[Category: Xue S]]
-
[[Category: Archaeal h-aca ribonucleoprotein complex]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Isomerase-rna complex]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Protein-rna complex]]
+
-
[[Category: Ribosome biogenesis]]
+
-
[[Category: Rrna processing]]
+
-
[[Category: Secsg]]
+
-
[[Category: Trna processing]]
+

Current revision

Substrate RNA Positioning in the Archaeal H/ACA Ribonucleoprotein Complex

PDB ID 2rfk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2rfk"
Personal tools