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| ==Structure of the Clostridium Perfringens CspB protease== | | ==Structure of the Clostridium Perfringens CspB protease== |
- | <StructureSection load='4i0w' size='340' side='right' caption='[[4i0w]], [[Resolution|resolution]] 1.60Å' scene=''> | + | <StructureSection load='4i0w' size='340' side='right'caption='[[4i0w]], [[Resolution|resolution]] 1.60Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4i0w]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_perfringens"_veillon_and_zuber_1898 "bacillus perfringens" veillon and zuber 1898]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I0W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4I0W FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4i0w]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I0W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4I0W FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CPF_2887, cspB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1502 "Bacillus perfringens" Veillon and Zuber 1898])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4i0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i0w OCA], [https://pdbe.org/4i0w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4i0w RCSB], [https://www.ebi.ac.uk/pdbsum/4i0w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4i0w ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4i0w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i0w OCA], [http://pdbe.org/4i0w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4i0w RCSB], [http://www.ebi.ac.uk/pdbsum/4i0w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4i0w ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/A0A0H2YU83_CLOP1 A0A0H2YU83_CLOP1] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bacillus perfringens veillon and zuber 1898]] | + | [[Category: Clostridium perfringens]] |
- | [[Category: Adams, C M]] | + | [[Category: Large Structures]] |
- | [[Category: Doublie, S]] | + | [[Category: Adams CM]] |
- | [[Category: Eckenroth, B E]] | + | [[Category: Doublie S]] |
- | [[Category: Hydrolase]] | + | [[Category: Eckenroth BE]] |
- | [[Category: Jellyroll]]
| + | |
- | [[Category: Subtilisin]]
| + | |
| Structural highlights
Function
A0A0H2YU83_CLOP1
Publication Abstract from PubMed
Spores are the major transmissive form of the nosocomial pathogen Clostridium difficile, a leading cause of healthcare-associated diarrhea worldwide. Successful transmission of C. difficile requires that its hardy, resistant spores germinate into vegetative cells in the gastrointestinal tract. A critical step during this process is the degradation of the spore cortex, a thick layer of peptidoglycan surrounding the spore core. In Clostridium sp., cortex degradation depends on the proteolytic activation of the cortex hydrolase, SleC. Previous studies have implicated Csps as being necessary for SleC cleavage during germination; however, their mechanism of action has remained poorly characterized. In this study, we demonstrate that CspB is a subtilisin-like serine protease whose activity is essential for efficient SleC cleavage and C. difficile spore germination. By solving the first crystal structure of a Csp family member, CspB, to 1.6 A, we identify key structural domains within CspB. In contrast with all previously solved structures of prokaryotic subtilases, the CspB prodomain remains tightly bound to the wildtype subtilase domain and sterically occludes a catalytically competent active site. The structure, combined with biochemical and genetic analyses, reveals that Csp proteases contain a unique jellyroll domain insertion critical for stabilizing the protease in vitro and in C. difficile. Collectively, our study provides the first molecular insight into CspB activity and function. These studies may inform the development of inhibitors that can prevent clostridial spore germination and thus disease transmission.
Structural and functional analysis of the CspB protease required for Clostridium spore germination.,Adams CM, Eckenroth BE, Putnam EE, Doublie S, Shen A PLoS Pathog. 2013 Feb;9(2):e1003165. doi: 10.1371/journal.ppat.1003165. Epub 2013, Feb 7. PMID:23408892[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Adams CM, Eckenroth BE, Putnam EE, Doublie S, Shen A. Structural and functional analysis of the CspB protease required for Clostridium spore germination. PLoS Pathog. 2013 Feb;9(2):e1003165. doi: 10.1371/journal.ppat.1003165. Epub 2013, Feb 7. PMID:23408892 doi:http://dx.doi.org/10.1371/journal.ppat.1003165
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