5w0p

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<StructureSection load='5w0p' size='340' side='right'caption='[[5w0p]], [[Resolution|resolution]] 3.01&Aring;' scene=''>
<StructureSection load='5w0p' size='340' side='right'caption='[[5w0p]], [[Resolution|resolution]] 3.01&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5w0p]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5W0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5W0P FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5w0p]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_RB55 Enterobacteria phage RB55], [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5W0P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5W0P FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.013&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4zwj|4zwj]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5w0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5w0p OCA], [https://pdbe.org/5w0p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5w0p RCSB], [https://www.ebi.ac.uk/pdbsum/5w0p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5w0p ProSAT]</span></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Sag ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5w0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5w0p OCA], [http://pdbe.org/5w0p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5w0p RCSB], [http://www.ebi.ac.uk/pdbsum/5w0p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5w0p ProSAT]</span></td></tr>
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</table>
</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/OPSD_HUMAN OPSD_HUMAN] Congenital stationary night blindness;Retinitis punctata albescens;Retinitis pigmentosa. The disease is caused by variants affecting the gene represented in this entry. The disease is caused by variants affecting the gene represented in this entry.
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/A0A097J792_BPT4 A0A097J792_BPT4]] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.[HAMAP-Rule:MF_04110]
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[https://www.uniprot.org/uniprot/OPSD_HUMAN OPSD_HUMAN] Photoreceptor required for image-forming vision at low light intensity (PubMed:7846071, PubMed:8107847). Required for photoreceptor cell viability after birth (PubMed:12566452, PubMed:2215617). Light-induced isomerization of the chromophore 11-cis-retinal to all-trans-retinal triggers a conformational change that activates signaling via G-proteins (PubMed:26200343, PubMed:28524165, PubMed:28753425, PubMed:8107847). Subsequent receptor phosphorylation mediates displacement of the bound G-protein alpha subunit by the arrestin SAG and terminates signaling (PubMed:26200343, PubMed:28524165).<ref>PMID:12566452</ref> <ref>PMID:2215617</ref> <ref>PMID:26200343</ref> <ref>PMID:28753425</ref> <ref>PMID:7846071</ref> <ref>PMID:8107847</ref> <ref>PMID:28524165</ref> [https://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref> [https://www.uniprot.org/uniprot/ARRS_MOUSE ARRS_MOUSE] Binds to photoactivated, phosphorylated RHO and terminates RHO signaling via G-proteins by competing with G-proteins for the same binding site on RHO (PubMed:16421323, PubMed:9333241). May play a role in preventing light-dependent degeneration of retinal photoreceptor cells (PubMed:16421323).<ref>PMID:16421323</ref> <ref>PMID:9333241</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
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[[Category: Enterobacteria phage RB55]]
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Lysozyme]]
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[[Category: Mus musculus]]
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[[Category: Barty, A]]
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[[Category: Barty A]]
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[[Category: Chapman, H N]]
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[[Category: Chapman HN]]
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[[Category: Cherezov, V]]
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[[Category: Cherezov V]]
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[[Category: Dror, R O]]
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[[Category: Dror RO]]
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[[Category: Eps, N Van]]
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[[Category: Ernst OP]]
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[[Category: Ernst, O P]]
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[[Category: Gao X]]
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[[Category: Gao, X]]
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[[Category: Goswami D]]
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[[Category: Goswami, D]]
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[[Category: Griffin PR]]
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[[Category: Griffin, P R]]
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[[Category: Gurevich VV]]
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[[Category: Gurevich, V V]]
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[[Category: He Y]]
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[[Category: He, Y]]
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[[Category: Hubbell WL]]
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[[Category: Hubbell, W L]]
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[[Category: Kang Y]]
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[[Category: Kang, Y]]
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[[Category: Latorraca NR]]
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[[Category: Latorraca, N R]]
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[[Category: Melcher K]]
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[[Category: Melcher, K]]
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[[Category: Pal K]]
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[[Category: Pal, K]]
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[[Category: Stevens RC]]
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[[Category: Stevens, R C]]
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[[Category: Van Eps N]]
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[[Category: Waal, P W.de]]
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[[Category: White TA]]
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[[Category: White, T A]]
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[[Category: Xu HE]]
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[[Category: Xu, H E]]
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[[Category: Yin Y]]
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[[Category: Yin, Y]]
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[[Category: Zhou XE]]
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[[Category: Zhou, X E]]
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[[Category: De Waal PW]]
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[[Category: Arrestin]]
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[[Category: Gpcr]]
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[[Category: Grk]]
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[[Category: Membrane protein]]
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[[Category: Phosphorylation code]]
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[[Category: Rhodopsin]]
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[[Category: Signaling protein]]
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Current revision

Crystal structure of rhodopsin bound to visual arrestin determined by X-ray free electron laser

PDB ID 5w0p

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