1vkp

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[[Image:1vkp.gif|left|200px]]<br /><applet load="1vkp" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="1vkp, resolution 1.53&Aring;" />
 
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'''X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT5G08170, AGMATINE IMINOHYDROLASE'''<br />
 
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==About this Structure==
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==X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT5G08170, AGMATINE IMINOHYDROLASE==
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1VKP is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana] with <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=EDO:'>EDO</scene> and <scene name='pdbligand=MPO:'>MPO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Agmatine_deiminase Agmatine deiminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.12 3.5.3.12] Known structural/functional Sites: <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+B+801'>AC1</scene>, <scene name='pdbsite=AC2:Mg+Binding+Site+For+Residue+A+802'>AC2</scene>, <scene name='pdbsite=AC3:Edo+Binding+Site+For+Residue+A+901'>AC3</scene>, <scene name='pdbsite=AC4:Edo+Binding+Site+For+Residue+A+902'>AC4</scene>, <scene name='pdbsite=AC5:Edo+Binding+Site+For+Residue+A+903'>AC5</scene>, <scene name='pdbsite=AC6:Edo+Binding+Site+For+Residue+B+904'>AC6</scene>, <scene name='pdbsite=AC7:Edo+Binding+Site+For+Residue+B+905'>AC7</scene>, <scene name='pdbsite=AC8:Edo+Binding+Site+For+Residue+A+906'>AC8</scene>, <scene name='pdbsite=AC9:Edo+Binding+Site+For+Residue+A+907'>AC9</scene>, <scene name='pdbsite=BC1:Edo+Binding+Site+For+Residue+A+908'>BC1</scene>, <scene name='pdbsite=BC2:Edo+Binding+Site+For+Residue+B+909'>BC2</scene>, <scene name='pdbsite=BC3:Edo+Binding+Site+For+Residue+A+910'>BC3</scene>, <scene name='pdbsite=BC4:Edo+Binding+Site+For+Residue+B+911'>BC4</scene>, <scene name='pdbsite=BC5:Edo+Binding+Site+For+Residue+B+912'>BC5</scene>, <scene name='pdbsite=BC6:Edo+Binding+Site+For+Residue+B+913'>BC6</scene> and <scene name='pdbsite=BC7:Mpo+Binding+Site+For+Residue+A+1000'>BC7</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VKP OCA].
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<StructureSection load='1vkp' size='340' side='right'caption='[[1vkp]], [[Resolution|resolution]] 1.53&Aring;' scene=''>
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[[Category: Agmatine deiminase]]
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1vkp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VKP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VKP FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.53&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPO:3[N-MORPHOLINO]PROPANE+SULFONIC+ACID'>MPO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vkp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vkp OCA], [https://pdbe.org/1vkp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vkp RCSB], [https://www.ebi.ac.uk/pdbsum/1vkp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vkp ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AGUA_ARATH AGUA_ARATH] Mediates the hydrolysis of agmatine into N-carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/1vkp_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vkp ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Allard, S T.M.]]
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[[Category: Allard STM]]
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[[Category: Bingman, C A.]]
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[[Category: Bingman CA]]
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[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
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[[Category: Phillips Jr GN]]
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[[Category: Jr., G N.Phillips.]]
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[[Category: Smith DW]]
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[[Category: Smith, D W.]]
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[[Category: Wesenberg GE]]
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[[Category: Wesenberg, G E.]]
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[[Category: EDO]]
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[[Category: MG]]
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[[Category: MPO]]
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[[Category: agmatine deiminase]]
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[[Category: agmatine iminohydrolase]]
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[[Category: aih]]
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[[Category: at5g08170]]
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[[Category: center for eukaryotic structural genomics]]
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[[Category: cesg]]
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[[Category: n-carbamoylputrescine]]
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[[Category: polyamine biosynthesis]]
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[[Category: protein structure initiative]]
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[[Category: psi]]
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[[Category: putrescine]]
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[[Category: structural genomics]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:36:19 2008''
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Current revision

X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT5G08170, AGMATINE IMINOHYDROLASE

PDB ID 1vkp

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