2jkh

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{{Seed}}
 
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[[Image:2jkh.jpg|left|200px]]
 
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==Factor Xa - cation inhibitor complex==
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The line below this paragraph, containing "STRUCTURE_2jkh", creates the "Structure Box" on the page.
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<StructureSection load='2jkh' size='340' side='right'caption='[[2jkh]], [[Resolution|resolution]] 1.25&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2jkh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JKH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JKH FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.25&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BI7:3-[(3AS,4R,8AS,8BR)-4-[5-(5-CHLORO-2-THIENYL)ISOXAZOL-3-YL]-1,3-DIOXOOCTAHYDROPYRROLO[3,4-A]PYRROLIZIN-2(3H)-YL]-N,N,N-TRIMETHYLPROPAN-1-AMINIUM'>BI7</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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{{STRUCTURE_2jkh| PDB=2jkh | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jkh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jkh OCA], [https://pdbe.org/2jkh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jkh RCSB], [https://www.ebi.ac.uk/pdbsum/2jkh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jkh ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN] Defects in F10 are the cause of factor X deficiency (FA10D) [MIM:[https://omim.org/entry/227600 227600]. A hemorrhagic disease with variable presentation. Affected individuals can manifest prolonged nasal and mucosal hemorrhage, menorrhagia, hematuria, and occasionally hemarthrosis. Some patients do not have clinical bleeding diathesis.<ref>PMID:2790181</ref> <ref>PMID:1973167</ref> <ref>PMID:1985698</ref> <ref>PMID:7669671</ref> <ref>PMID:8529633</ref> <ref>PMID:7860069</ref> <ref>PMID:8845463</ref> <ref>PMID:8910490</ref> <ref>PMID:10468877</ref> <ref>PMID:10746568</ref> <ref>PMID:10739379</ref> <ref>PMID:11248282</ref> <ref>PMID:11728527</ref> <ref>PMID:12945883</ref> <ref>PMID:15650540</ref> <ref>PMID:17393015</ref> <ref>PMID:19135706</ref>
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== Function ==
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[https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN] Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jk/2jkh_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jkh ConSurf].
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<div style="clear:both"></div>
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===FACTOR XA - CATION INHIBITOR COMPLEX===
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==See Also==
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*[[Factor Xa|Factor Xa]]
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== References ==
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==About this Structure==
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<references/>
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2JKH is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JKH OCA].
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__TOC__
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</StructureSection>
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==Reference==
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Cation-pi Interactions at the Active Site of Factor Xa: Dramatic Enhancement upon Stepwise N-Alkylation of Ammonium Ions., Salonen LM, Bucher C, Banner DW, Haap W, Mary JL, Benz J, Kuster O, Seiler P, Schweizer WB, Diederich F, Angew Chem Int Ed Engl. 2008 Dec 19;48(4):811-814. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/19101972 19101972]
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[[Category: Coagulation factor Xa]]
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Banner, D W.]]
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[[Category: Large Structures]]
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[[Category: Benz, J.]]
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[[Category: Banner DW]]
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[[Category: Bucher, C.]]
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[[Category: Benz J]]
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[[Category: Diederich, F.]]
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[[Category: Bucher C]]
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[[Category: Haap, W.]]
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[[Category: Diederich F]]
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[[Category: Kuster, O.]]
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[[Category: Haap W]]
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[[Category: Mary, J L.]]
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[[Category: Kuster O]]
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[[Category: Salonen, L M.]]
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[[Category: Mary JL]]
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[[Category: Schweizer, W B.]]
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[[Category: Salonen LM]]
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[[Category: Seiler, P.]]
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[[Category: Schweizer WB]]
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[[Category: Blood coagulation]]
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[[Category: Seiler P]]
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[[Category: Calcium]]
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[[Category: Cation]]
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[[Category: Cleavage on pair of basic residue]]
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[[Category: Coagulation factor]]
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[[Category: Egf-like domain]]
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[[Category: Gamma-carboxyglutamic acid]]
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[[Category: Glycoprotein]]
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[[Category: Hydrolase]]
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[[Category: Hydroxylation]]
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[[Category: Inhibitor]]
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[[Category: Plasma]]
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[[Category: Polymorphism]]
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[[Category: Protease]]
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[[Category: Secreted]]
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[[Category: Serine protease]]
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[[Category: Zymogen]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 14 13:03:02 2009''
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Current revision

Factor Xa - cation inhibitor complex

PDB ID 2jkh

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