1naa

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{{Seed}}
 
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[[Image:1naa.png|left|200px]]
 
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==Cellobiose Dehydrogenase Flavoprotein Fragment in Complex with Cellobionolactam==
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The line below this paragraph, containing "STRUCTURE_1naa", creates the "Structure Box" on the page.
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<StructureSection load='1naa' size='340' side='right'caption='[[1naa]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1naa]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Phanerodontia_chrysosporium Phanerodontia chrysosporium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NAA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NAA FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6FA:6-HYDROXY-FLAVIN-ADENINE+DINUCLEOTIDE'>6FA</scene>, <scene name='pdbligand=ABL:(2R,3R,4R,5R)-4,5-DIHYDROXY-2-(HYDROXYMETHYL)-6-OXOPIPERIDIN-3-YL+BETA-D-GLUCOPYRANOSIDE'>ABL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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{{STRUCTURE_1naa| PDB=1naa | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1naa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1naa OCA], [https://pdbe.org/1naa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1naa RCSB], [https://www.ebi.ac.uk/pdbsum/1naa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1naa ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CDH_PHACH CDH_PHACH] Degrades both lignin and cellulose. Oxidizes cellobiose to cellobionolactone.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/na/1naa_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1naa ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The extracellular flavocytochrome cellobiose dehydrogenase (CDH; EC ) participates in lignocellulose degradation by white-rot fungi with a proposed role in the early events of wood degradation. The complete hemoflavoenzyme consists of a catalytically active dehydrogenase fragment (DH(cdh)) connected to a b-type cytochrome domain via a linker peptide. In the reductive half-reaction, DH(cdh) catalyzes the oxidation of cellobiose to yield cellobiono-1,5-lactone. The active site of DH(cdh) is structurally similar to that of glucose oxidase and cholesterol oxidase, with a conserved histidine residue positioned at the re face of the flavin ring close to the N5 atom. The mechanisms of oxidation in glucose oxidase and cholesterol oxidase are still poorly understood, partly because of lack of experimental structure data or difficulties in interpreting existing data for enzyme-ligand complexes. Here we report the crystal structure of the Phanerochaete chrysosporium DH(cdh) with a bound inhibitor, cellobiono-1,5-lactam, at 1.8-A resolution. The distance between the lactam C1 and the flavin N5 is only 2.9 A, implying that in an approximately planar transition state, the maximum distance for the axial 1-hydrogen to travel for covalent addition to N5 is 0.8-0.9 A. The lactam O1 interacts intimately with the side chains of His-689 and Asn-732. Our data lend substantial structural support to a reaction mechanism where His-689 acts as a general base by abstracting the O1 hydroxyl proton in concert with transfer of the C1 hydrogen as hydride to the re face of the flavin N5.
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===Cellobiose Dehydrogenase Flavoprotein Fragment in Complex with Cellobionolactam===
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Mechanism of the reductive half-reaction in cellobiose dehydrogenase.,Hallberg BM, Henriksson G, Pettersson G, Vasella A, Divne C J Biol Chem. 2003 Feb 28;278(9):7160-6. Epub 2002 Dec 19. PMID:12493734<ref>PMID:12493734</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_12493734}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1naa" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 12493734 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_12493734}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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1NAA is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Phanerochaete_chrysosporium Phanerochaete chrysosporium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NAA OCA].
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[[Category: Phanerodontia chrysosporium]]
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[[Category: Divne C]]
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==Reference==
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[[Category: Hallberg BM]]
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<ref group="xtra">PMID:12493734</ref><references group="xtra"/>
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[[Category: Henriksson G]]
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[[Category: Phanerochaete chrysosporium]]
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[[Category: Pettersson G]]
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[[Category: Divne, C.]]
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[[Category: Vasella A]]
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[[Category: Hallberg, B M.]]
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[[Category: Henriksson, G.]]
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[[Category: Pettersson, G.]]
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[[Category: Vasella, A.]]
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[[Category: 6-hydroxylated fad]]
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[[Category: Alpha/beta structure]]
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[[Category: Gmc oxidoreductase]]
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[[Category: Phbh fold]]
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[[Category: Product analogue complex]]
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[[Category: Rossman fold]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 10:53:43 2009''
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Current revision

Cellobiose Dehydrogenase Flavoprotein Fragment in Complex with Cellobionolactam

PDB ID 1naa

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