1vm0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:36, 21 November 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1vm0.gif|left|200px]]
 
-
{{Structure
+
==X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT2G34160==
-
|PDB= 1vm0 |SIZE=350|CAPTION= <scene name='initialview01'>1vm0</scene>, resolution 1.80&Aring;
+
<StructureSection load='1vm0' size='340' side='right'caption='[[1vm0]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:K+Binding+Site+For+Residue+B+300'>AC1</scene>, <scene name='pdbsite=AC2:K+Binding+Site+For+Residue+A+301'>AC2</scene>, <scene name='pdbsite=AC3:No3+Binding+Site+For+Residue+B+400'>AC3</scene>, <scene name='pdbsite=AC4:No3+Binding+Site+For+Residue+B+401'>AC4</scene>, <scene name='pdbsite=AC5:No3+Binding+Site+For+Residue+A+402'>AC5</scene> and <scene name='pdbsite=AC6:No3+Binding+Site+For+Residue+B+403'>AC6</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>
+
<table><tr><td colspan='2'>[[1vm0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VM0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VM0 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
|GENE= At2g34160 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01918 Alba]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vm0 OCA], [https://pdbe.org/1vm0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vm0 RCSB], [https://www.ebi.ac.uk/pdbsum/1vm0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vm0 ProSAT], [https://www.topsan.org/Proteins/CESG/1vm0 TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vm0 OCA], [http://www.ebi.ac.uk/pdbsum/1vm0 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1vm0 RCSB]</span>
+
</table>
-
}}
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Y2416_ARATH Y2416_ARATH]
-
'''X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT2G34160'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
1VM0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VM0 OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/1vm0_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vm0 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Allard, S T.M.]]
+
[[Category: Allard STM]]
-
[[Category: Bingman, C A.]]
+
[[Category: Bingman CA]]
-
[[Category: Bitto, E.]]
+
[[Category: Bitto E]]
-
[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
+
[[Category: Phillips Jr GN]]
-
[[Category: Jr., G N.Phillips.]]
+
[[Category: Smith DW]]
-
[[Category: Smith, D W.]]
+
[[Category: Wesenberg GE]]
-
[[Category: Wesenberg, G E.]]
+
-
[[Category: at2g34160]]
+
-
[[Category: center for eukaryotic structural genomic]]
+
-
[[Category: cesg]]
+
-
[[Category: nitrate]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:09:59 2008''
+

Current revision

X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT2G34160

PDB ID 1vm0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools