2dpw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:52, 21 November 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2dpw.jpg|left|200px]]
 
-
{{Structure
+
==Hpothetical Transferase Structure from Thermus thermophilus==
-
|PDB= 2dpw |SIZE=350|CAPTION= <scene name='initialview01'>2dpw</scene>, resolution 2.900&Aring;
+
<StructureSection load='2dpw' size='340' side='right'caption='[[2dpw]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
+
<table><tr><td colspan='2'>[[2dpw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DPW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DPW FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dpw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dpw OCA], [https://pdbe.org/2dpw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dpw RCSB], [https://www.ebi.ac.uk/pdbsum/2dpw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dpw ProSAT], [https://www.topsan.org/Proteins/RSGI/2dpw TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dpw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dpw OCA], [http://www.ebi.ac.uk/pdbsum/2dpw PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2dpw RCSB]</span>
+
== Evolutionary Conservation ==
-
}}
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
'''Hpothetical Transferase Structure from Thermus thermophilus'''
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/2dpw_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
==About this Structure==
+
<text>to colour the structure by Evolutionary Conservation</text>
-
2DPW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DPW OCA].
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dpw ConSurf].
-
[[Category: Thermus thermophilus]]
+
<div style="clear:both"></div>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
__TOC__
-
[[Category: Rehse, P H.]]
+
</StructureSection>
-
[[Category: Yokoyama, S.]]
+
[[Category: Large Structures]]
-
[[Category: national project on protein structural and functional analyse]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: nppsfa]]
+
[[Category: Rehse PH]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Yokoyama S]]
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: transferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:37:50 2008''
+

Current revision

Hpothetical Transferase Structure from Thermus thermophilus

PDB ID 2dpw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools