4yv6

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(New page: '''Unreleased structure''' The entry 4yv6 is ON HOLD Authors: Neiditch, M.B., Parashar, V. Description: Category: Unreleased Structures Category: Neiditch, M.B [[Category: Par...)
Current revision (03:44, 21 November 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 4yv6 is ON HOLD
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==X-ray crystal structure of Streptococcus dysgalactiae SHP pheromone receptor Rgg2==
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<StructureSection load='4yv6' size='340' side='right'caption='[[4yv6]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4yv6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_dysgalactiae Streptococcus dysgalactiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YV6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YV6 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.053&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yv6 OCA], [https://pdbe.org/4yv6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yv6 RCSB], [https://www.ebi.ac.uk/pdbsum/4yv6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yv6 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A0J9X288_STRDY A0A0J9X288_STRDY]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Peptide pheromone cell-cell signaling (quorum sensing) regulates the expression of diverse developmental phenotypes (including virulence) in Firmicutes, which includes common human pathogens, e.g., Streptococcus pyogenes and Streptococcus pneumoniae. Cytoplasmic transcription factors known as "Rgg proteins" are peptide pheromone receptors ubiquitous in Firmicutes. Here we present X-ray crystal structures of a Streptococcus Rgg protein alone and in complex with a tight-binding signaling antagonist, the cyclic undecapeptide cyclosporin A. To our knowledge, these represent the first Rgg protein X-ray crystal structures. Based on the results of extensive structure-function analysis, we reveal the peptide pheromone-binding site and the mechanism by which cyclosporin A inhibits activation of the peptide pheromone receptor. Guided by the Rgg-cyclosporin A complex structure, we predicted that the nonimmunosuppressive cyclosporin A analog valspodar would inhibit Rgg activation. Indeed, we found that, like cyclosporin A, valspodar inhibits peptide pheromone activation of conserved Rgg proteins in medically relevant Streptococcus species. Finally, the crystal structures presented here revealed that the Rgg protein DNA-binding domains are covalently linked across their dimerization interface by a disulfide bond formed by a highly conserved cysteine. The DNA-binding domain dimerization interface observed in our structures is essentially identical to the interfaces previously described for other members of the XRE DNA-binding domain family, but the presence of an intermolecular disulfide bond buried in this interface appears to be unique. We hypothesize that this disulfide bond may, under the right conditions, affect Rgg monomer-dimer equilibrium, stabilize Rgg conformation, or serve as a redox-sensitive switch.
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Authors: Neiditch, M.B., Parashar, V.
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Rgg protein structure-function and inhibition by cyclic peptide compounds.,Parashar V, Aggarwal C, Federle MJ, Neiditch MB Proc Natl Acad Sci U S A. 2015 Apr 6. pii: 201500357. PMID:25847993<ref>PMID:25847993</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Neiditch, M.B]]
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<div class="pdbe-citations 4yv6" style="background-color:#fffaf0;"></div>
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[[Category: Parashar, V]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Streptococcus dysgalactiae]]
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[[Category: Neiditch MB]]
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[[Category: Parashar V]]

Current revision

X-ray crystal structure of Streptococcus dysgalactiae SHP pheromone receptor Rgg2

PDB ID 4yv6

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