3r5p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:43, 27 November 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3r5p.png|left|200px]]
 
-
{{STRUCTURE_3r5p| PDB=3r5p | SCENE= }}
+
==Structure of Ddn, the Deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824==
 +
<StructureSection load='3r5p' size='340' side='right'caption='[[3r5p]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3r5p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R5P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R5P FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r5p OCA], [https://pdbe.org/3r5p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r5p RCSB], [https://www.ebi.ac.uk/pdbsum/3r5p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r5p ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DDN_MYCTU DDN_MYCTU] Nitroreductase involved in the bioreductive activation of the antitubercular prodrug PA-824 (nitroimidazo-oxazine) developed for anti-tuberculosis therapy against both replicating and persistent bacteria. It converts PA-824 into three primary metabolites; the major one is the des-nitroimidazole (des-nitro) which generated reactive nitrogen species, including nitric oxide (NO). Reactive nitrogen species play a major role in mammalian defense against mycobacterial infections.<ref>PMID:16387854</ref> <ref>PMID:19039139</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Tuberculosis continues to be a global health threat, making bicyclic nitroimidazoles an important new class of therapeutics. A deazaflavin-dependent nitroreductase (Ddn) from Mycobacterium tuberculosis catalyzes the reduction of nitroimidazoles such as PA-824, resulting in intracellular release of lethal reactive nitrogen species. The N-terminal 30 residues of Ddn are functionally important but are flexible or access multiple conformations, preventing structural characterization of the full-length, enzymatically active enzyme. Several structures were determined of a truncated, inactive Ddn protein core with and without bound F(420) deazaflavin coenzyme as well as of a catalytically competent homolog from Nocardia farcinica. Mutagenesis studies based on these structures identified residues important for binding of F(420) and PA-824. The proposed orientation of the tail of PA-824 toward the N terminus of Ddn is consistent with current structure-activity relationship data.
-
===Structure of Ddn, the Deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824===
+
Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824.,Cellitti SE, Shaffer J, Jones DH, Mukherjee T, Gurumurthy M, Bursulaya B, Boshoff HI, Choi I, Nayyar A, Lee YS, Cherian J, Niyomrattanakit P, Dick T, Manjunatha UH, Barry CE 3rd, Spraggon G, Geierstanger BH Structure. 2012 Jan 11;20(1):101-12. PMID:22244759<ref>PMID:22244759</ref>
-
{{ABSTRACT_PUBMED_22244759}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 3r5p" style="background-color:#fffaf0;"></div>
-
[[3r5p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R5P OCA].
+
==See Also==
==See Also==
-
*[[Nitroreductase|Nitroreductase]]
+
*[[Nitroreductase 3D structures|Nitroreductase 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:022244759</ref><references group="xtra"/>
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mycobacterium tuberculosis]]
[[Category: Mycobacterium tuberculosis]]
-
[[Category: Barry, C E.]]
+
[[Category: Barry CE]]
-
[[Category: Boshoff, H I.M.]]
+
[[Category: Boshoff HIM]]
-
[[Category: Bursulaya, B.]]
+
[[Category: Bursulaya B]]
-
[[Category: Cellitti, S E.]]
+
[[Category: Cellitti SE]]
-
[[Category: Cherian, J.]]
+
[[Category: Cherian J]]
-
[[Category: Choi, I.]]
+
[[Category: Choi I]]
-
[[Category: Dick, T.]]
+
[[Category: Dick T]]
-
[[Category: Geierstanger, B H.]]
+
[[Category: Geierstanger BH]]
-
[[Category: Gurumurthy, M.]]
+
[[Category: Gurumurthy M]]
-
[[Category: Jones, D H.]]
+
[[Category: Jones DH]]
-
[[Category: Lee, Y S.]]
+
[[Category: Lee YS]]
-
[[Category: Manjunatha, U H.]]
+
[[Category: Manjunatha UH]]
-
[[Category: Mukherjee, T.]]
+
[[Category: Mukherjee T]]
-
[[Category: Nayya, A.]]
+
[[Category: Nayya A]]
-
[[Category: Niyomrattanakit, P.]]
+
[[Category: Niyomrattanakit P]]
-
[[Category: Shaffer, J.]]
+
[[Category: Shaffer J]]
-
[[Category: Spraggon, G.]]
+
[[Category: Spraggon G]]
-
[[Category: Deazaflavin-dependent nitroreductase]]
+
-
[[Category: Duf385]]
+
-
[[Category: Nitroimidazole]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Pa-824]]
+
-
[[Category: Split barrel-like fold]]
+

Current revision

Structure of Ddn, the Deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824

PDB ID 3r5p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3r5p"
Personal tools