4kyi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:08, 27 November 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='4kyi' size='340' side='right'caption='[[4kyi]], [[Resolution|resolution]] 3.08&Aring;' scene=''>
<StructureSection load='4kyi' size='340' side='right'caption='[[4kyi]], [[Resolution|resolution]] 3.08&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4kyi]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human] and [http://en.wikipedia.org/wiki/Legph Legph]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KYI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4kyi]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 Legionella pneumophila subsp. pneumophila str. Philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KYI FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.075&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">vipD, lpg2831 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272624 LEGPH]), RAB5C, RABL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4kyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kyi OCA], [http://pdbe.org/4kyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4kyi RCSB], [http://www.ebi.ac.uk/pdbsum/4kyi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4kyi ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4kyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kyi OCA], [https://pdbe.org/4kyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4kyi RCSB], [https://www.ebi.ac.uk/pdbsum/4kyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4kyi ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RAB5C_HUMAN RAB5C_HUMAN]] Protein transport. Probably involved in vesicular traffic (By similarity).
+
[https://www.uniprot.org/uniprot/RAB5C_HUMAN RAB5C_HUMAN] Protein transport. Probably involved in vesicular traffic (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 4kyi" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4kyi" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ras-related protein Rab 3D structures|Ras-related protein Rab 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Legph]]
+
[[Category: Legionella pneumophila subsp. pneumophila str. Philadelphia 1]]
-
[[Category: Fernandez-Recio, J]]
+
[[Category: Fernandez-Recio J]]
-
[[Category: Gaspar, A H]]
+
[[Category: Gaspar AH]]
-
[[Category: Hierro, A]]
+
[[Category: Hierro A]]
-
[[Category: Lucas, M]]
+
[[Category: Lucas M]]
-
[[Category: Machner, M P]]
+
[[Category: Machner MP]]
-
[[Category: Pallara, C]]
+
[[Category: Pallara C]]
-
[[Category: Rojas, A L]]
+
[[Category: Rojas AL]]
-
[[Category: Phospholipase]]
+
-
[[Category: Protein binding-transport protein complex]]
+

Current revision

Crystal structure of the phospholipase VipD from Legionella pneumophila in complex with the human GTPase Rab5

PDB ID 4kyi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools