1wu8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:42, 25 December 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1wu8.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of project PH0463 from Pyrococcus horikoshii OT3==
-
|PDB= 1wu8 |SIZE=350|CAPTION= <scene name='initialview01'>1wu8</scene>, resolution 2.60&Aring;
+
<StructureSection load='1wu8' size='340' side='right'caption='[[1wu8]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ADN:ADENOSINE'>ADN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[1wu8]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WU8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WU8 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADN:ADENOSINE'>ADN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wu8 OCA], [https://pdbe.org/1wu8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wu8 RCSB], [https://www.ebi.ac.uk/pdbsum/1wu8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wu8 ProSAT], [https://www.topsan.org/Proteins/RSGI/1wu8 TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wu8 OCA], [http://www.ebi.ac.uk/pdbsum/1wu8 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1wu8 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/RSAMH_PYRHO RSAMH_PYRHO] Catalyzes the hydrolysis of S-adenosyl-L-methionine (SAM) into adenosine and L-methionine (PubMed:18551689). Is likely stereoselective, specifically hydrolyzing (R)-S-adenosyl-L-methionine ((R)-SAM), the inactive form of the ubiquitous cofactor SAM, and not the active form of SAM, (S)-S-adenosyl-L-methionine (By similarity). Probaly plays a role in preventing accumulation of (R)-S-adenosyl-L-methionine in cells; maintenance of (S)-S-denosyl-L-methionine homochirality is important for cellular health given that the (R)-form is largely inactive as a methyl donor and can function as an inhibitor of methyltransferases (By similarity). Is unable to mediate a fluorination or chlorination reaction with SAM (PubMed:18551689).[UniProtKB:A4X4S2]<ref>PMID:18551689</ref>
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of project PH0463 from Pyrococcus horikoshii OT3'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wu/1wu8_consurf.spt"</scriptWhenChecked>
-
1WU8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii_ot3 Pyrococcus horikoshii ot3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WU8 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Pyrococcus horikoshii ot3]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Kunishima, N.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wu8 ConSurf].
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
<div style="clear:both"></div>
-
[[Category: Shimizu, K.]]
+
== References ==
-
[[Category: riken structural genomics/proteomics initiative]]
+
<references/>
-
[[Category: rsgi]]
+
__TOC__
-
[[Category: structural genomic]]
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:41:04 2008''
+
[[Category: Pyrococcus horikoshii OT3]]
 +
[[Category: Kunishima N]]
 +
[[Category: Shimizu K]]

Current revision

Crystal structure of project PH0463 from Pyrococcus horikoshii OT3

PDB ID 1wu8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools