User:Jaime Prilusky/JSmolExtension

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(A few examples of supported tags using [http://proteopedia.org/wiki/support/JSmolExtension/JmolExtension_604.zip JmolExtension_604.zip])
(A few examples of supported tags using JmolExtension_604)
Line 1: Line 1:
<div style='background-color:#66FF66;padding:5px;'>
<div style='background-color:#66FF66;padding:5px;'>
== A few examples of supported tags using JmolExtension_604 ==
== A few examples of supported tags using JmolExtension_604 ==
 +
</div>
* Download the file [http://proteopedia.org/wiki/support/JSmolExtension/JmolExtension_604.zip JmolExtension_604.zip]
* Download the file [http://proteopedia.org/wiki/support/JSmolExtension/JmolExtension_604.zip JmolExtension_604.zip]
Line 6: Line 7:
* Add to the LocalSettings.php a line wfLoadExtension( 'Jmol' );
* Add to the LocalSettings.php a line wfLoadExtension( 'Jmol' );
-
</div>
 
Some [[User:Jaime Prilusky/Test/JSmolExtensionExamples|more examples]]
Some [[User:Jaime Prilusky/Test/JSmolExtensionExamples|more examples]]

Revision as of 18:43, 4 January 2025

A few examples of supported tags using JmolExtension_604

  • Download the file JmolExtension_604.zip
  • Expand this .zip in the extensions folder of your wiki. It will create the folder Jmol/.
  • Add to the LocalSettings.php a line wfLoadExtension( 'Jmol' );

Some more examples

JSmol applet in the same page

wikiPageContents 

Some caption here, enabled for wikitext, i.e double square brackets 3rec

Drag the structure with the mouse to rotate
The applet on the right is generated from this code
<jmol><jmolApplet>
<title> wikiPageContents </title>
<float>right</float>
<color>red</color><size>200</size>
<uploadedFileContents>chair.xyz</uploadedFileContents>
<pspeed>2</pspeed>
<caption>Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]</caption>
<controls>spin popup</controls>
<animgifurl>http://proteopedia.org/wiki/images/8/8d/2cts.gif</animgifurl>
</jmolApplet></jmol>
  • <caption> Text displayed below the applet
  • <captioncss> CSS style for Caption
  • <color> Applet background colour
  • <controls> Draws control buttons [ all | spin | quality | popup ]
  • <float> [ left | right ]
  • <frame> true: draws frame around applet
  • <pspeed> Platform speed for applet [ 1 .. 8 ]
  • <script> Jmol script, i.e. load $NC(Cl)(C)O;
  • <size> Applet side in pixels
  • <title> Text displayed on top of the applet
  • <titlecss> CSS style for Title
  • <animgifurl> URL for animated GIF to display before rendering the model
  • <uploadedfilecontents> renders uploaded structure
  • <urlcontents> renders structure from URL
  • <wikipagecontents> renders content from wiki page

JSmol applet in a popup window

jmolFile <jmolFile text="Explanatory text for link">Chair.xyz</jmolFile>

... 'and what is the use of a book,' thought Alice 'without pictures or conversation?'

jmolSmiles <jmolSmiles text='nitrobenzene'>c1ccccc1[N+](=O)[O-]</jmolSmiles>

Both versions, using the target as a link or using an alternate text, are supported: nitrobenzene and c1ccccc1[N+](=O)[O-]

jmolAppletButton

jmolPdb <jmolPdb>3rec</jmolPdb> 3rec


Proteopedia Page Contributors and Editors (what is this?)

Jaime Prilusky

Personal tools