Proteopedia:Openfox

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Line 47: Line 47:
see page: https://proteopedia.org/wiki/index.php/Journal:Acta_Cryst_D:S2059798324008210
see page: https://proteopedia.org/wiki/index.php/Journal:Acta_Cryst_D:S2059798324008210
n.b. The boxes with words like "superposition" and "Animation" are not present, Needs to be fixed and get to work like in proteopedia.org.
n.b. The boxes with words like "superposition" and "Animation" are not present, Needs to be fixed and get to work like in proteopedia.org.
-
√√*(13) This page has no starting "Jmol" why is this different from the page on (12) above? http://proteopedia.openfox.io/w/Journal:Acta_Cryst_D:S2059798324008246
+
*(13) This page has no starting "Jmol" why is this different from the page on (12) above?
-
+
http://proteopedia.openfox.io/w/Journal:Acta_Cryst_D:S2059798324008246
 +
see corresponding page that works: https://proteopedia.org/wiki/index.php/Journal:Acta_Cryst_D:S2059798324008246
 +
n.b. NO GREEN Links and No Boxes like around the words "Orth(A) ph 9.0" etc.
 +
n.b. text for making the boxes and executing the commands are present in the wikitext, see:
 +
<jmol>
 +
-----------------------------------
 +
<jmolButton>
 +
<script>script /scripts/10/1056673/Fig_6a/24.spt
 +
hide water; set zshade off</script>
 +
<text>Orth(A) pH 9.0</text>
 +
</jmolButton>
 +
<jmolButton>
 +
<script>script /scripts/10/1056673/Fig_6b/9.spt
 +
hide water; set zshade off</script>
 +
<text>Orth(B) pH 9.0</text>
 +
</jmolButton>
 +
</jmol>
 +
-----------------------------------
 +
<StructureSection load='' size='200' side='right' scene='10/1055499/8vo1/1' caption='3D structure pf pathogenesis-related family 10, specifically PR10-10-Cys155Ser (PDB-ID [[8vo1]]).'>
 +
*(14) Page: http://proteopedia.openfox.io/w/Journal:Acta_Cryst_D:S2059798324007733
 +
no Jmol in the initial view
 +
n.b. this page has a scene as the opening view of the molecule in text
 +
please edit the page and you'll see the wikitext that generates the following scene:
 +
</StructureSection>
 +
 
2025_01_30
2025_01_30
-
√√*(15) PMID does not get converted to complete reference, i.e &lt;ref>PMID:39268708&lt;/ref> as seen on the bottom of page http://proteopedia.openfox.io/w/Journal:Acta_Cryst_D:S2059798324008210 looks fine on page https://proteopedia.org/wiki/index.php/Journal:Acta_Cryst_D:S2059798324008210
+
*(15) PMID does not get converted to complete reference, i.e &lt;ref>PMID:39268708&lt;/ref> as seen on the bottom of page http://proteopedia.openfox.io/w/Journal:Acta_Cryst_D:S2059798324008210 looks fine on page https://proteopedia.org/wiki/index.php/Journal:Acta_Cryst_D:S2059798324008210
-
√√*(16) No Jmol on page: http://proteopedia.openfox.io/w/Journal:Molecular_Cell:1 seems to be a pretty general problem for many of the pages listed on: http://proteopedia.openfox.io/w/Proteopedia:I3DC
+
*(16) No Jmol on page: http://proteopedia.openfox.io/w/Journal:Molecular_Cell:1 seems to be a pretty general problem for many of the pages listed on: http://proteopedia.openfox.io/w/Proteopedia:I3DC
2025_02_04
2025_02_04

Revision as of 09:55, 4 February 2025

Problems

  • (3) no applet on [Show preview] when editing a page
  • (6) mail: tool "email this user' returns Unknown error in PHP's mail() function.
  • (7) mail: never received email with a requested temporary password, possibly same error.
  • (9) permissions: user student allowed to create pages with any name. Must start with Sandbox
  • (10) SAT Scene Authoring Tool
    • (10a) missing controls/options under applet
    • (10b) Undo-Redo not working
    • (10c) Save scene
      • (10c-1) missing preview of caption under applet
      • (10C-2) button Insert scene link not working
    • (10b) Load scene
      • (10b-1) not showing list of scenes lo to load
    • (10c)Colors
      • (10c-1) missing colors palette
    • (10d)Labels
      • (10d-1) mouse click select not working
      • (10d-2) show measurements not working

2025_01_22

  • (11) While logged on as Joel_L._Sussman, NO option to edit the page:

http://proteopedia.openfox.io/w/Journal:Acta_Cryst_D:S2059798324008210

2025_01_30

  • (12) This page looks spectacularly good, the link load very fast too, and opening page has a molecule: 
     http://proteopedia.openfox.io/w/Journal:Acta_Cryst_D:S2059798324008210
     BUT  toward the bottom of the page NONE of the animations work,
     see page: https://proteopedia.org/wiki/index.php/Journal:Acta_Cryst_D:S2059798324008210
     n.b. The boxes with words like "superposition" and "Animation" are not present,  Needs to be fixed and get to work like in proteopedia.org.
  • (13) This page has no starting "Jmol" why is this different from the page on (12) above? 
     http://proteopedia.openfox.io/w/Journal:Acta_Cryst_D:S2059798324008246
     see corresponding page that works: https://proteopedia.org/wiki/index.php/Journal:Acta_Cryst_D:S2059798324008246
     n.b. NO GREEN Links and No Boxes like around the words "Orth(A) ph 9.0" etc.
     n.b. text for making the boxes and executing the commands are present in the wikitext, see:

3D structure pf pathogenesis-related family 10, specifically PR10-10-Cys155Ser (PDB-ID 8vo1).

Drag the structure with the mouse to rotate

2025_01_30

2025_02_04 √√*(17) No 3D Image of molecule on page: http://proteopedia.openfox.io/w/Introduction_to_protein_structure compare to: https://proteopedia.org/wiki/index.php/Introduction_to_protein_structure

√√*(18) Why does page: http://proteopedia.openfox.io/w/Disaccharides not look like the equivalent on Proteopedia: https://proteopedia.org/wiki/index.php/Disaccharides

Retrieved from "http://52.214.119.220/wiki/index.php/Proteopedia:Openfox"
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