9h4t
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 9h4t is ON HOLD until sometime in the future Authors: Panwar, A., Martins, B.M., Sommer, F., Dobbek, H., Iobbi-Nivol, C., Jourlin-Castelli, C., Leim...) |
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- | '''Unreleased structure''' | ||
- | + | ==Crystal Structure of TorA== | |
+ | <StructureSection load='9h4t' size='340' side='right'caption='[[9h4t]], [[Resolution|resolution]] 1.86Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[9h4t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9H4T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9H4T FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=6MO:MOLYBDENUM(VI)+ION'>6MO</scene>, <scene name='pdbligand=MLT:D-MALATE'>MLT</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>PGD</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9h4t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9h4t OCA], [https://pdbe.org/9h4t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9h4t RCSB], [https://www.ebi.ac.uk/pdbsum/9h4t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9h4t ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/TORA_ECOLI TORA_ECOLI] Reduces trimethylamine-N-oxide (TMAO) into trimethylamine; an anaerobic reaction coupled to energy-yielding reactions. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The enterobacterium Escherichia coli present in the human gut can reduce trimethylamine N-oxide (TMAO) to trimethylamine during anaerobic respiration. The TMAO reductase TorA is a monomeric, bis-molybdopterin guanine dinucleotide (bis-MGD) cofactor-containing enzyme that belongs to the dimethyl sulfoxide reductase family of molybdoenzymes. TorA is anchored to the membrane via TorC, a pentahemic c-type cytochrome which receives the electrons from the menaquinol pool. Here, we designed an expression system for the production of a stable soluble form of multiheme-containing TorC, providing, for the first time, the purification of a soluble pentahemic cytochrome-c from E. coli. Our focus was to investigate the interaction between TorA and soluble TorC to establish the electron transfer pathway. We solved the X-ray structure of E. coli TorA and performed chemical crosslinking of TorA and TorC. Another goal was to establish an activity assay that used the physiological electron transfer pathway instead of the commonly used unphysiological electron donors methylviologen or benzylviologen. An AlphaFold model including the crosslinking sites provided insights into the electron transfer between TorC(C) and the active site of TorA. | ||
- | + | Purification and Electron Transfer from Soluble c-Type Cytochrome TorC to TorA for Trimethylamine N-Oxide Reduction.,Panwar A, Martins BM, Sommer F, Schroda M, Dobbek H, Iobbi-Nivol C, Jourlin-Castelli C, Leimkuhler S Int J Mol Sci. 2024 Dec 12;25(24):13331. doi: 10.3390/ijms252413331. PMID:39769096<ref>PMID:39769096</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 9h4t" style="background-color:#fffaf0;"></div> |
- | [[Category: Dobbek | + | == References == |
- | [[Category: | + | <references/> |
- | [[Category: | + | __TOC__ |
- | [[Category: | + | </StructureSection> |
- | [[Category: | + | [[Category: Escherichia coli]] |
- | [[Category: | + | [[Category: Large Structures]] |
+ | [[Category: Dobbek H]] | ||
+ | [[Category: Iobbi-Nivol C]] | ||
+ | [[Category: Jourlin-Castelli C]] | ||
+ | [[Category: Leimkuehler S]] | ||
+ | [[Category: Martins BM]] | ||
+ | [[Category: Panwar A]] | ||
+ | [[Category: Sommer F]] |
Current revision
Crystal Structure of TorA
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