1ppd
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1ppd" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ppd, resolution 2.0Å" /> '''RESTRAINED LEAST-SQUA...) |
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| - | [[Image:1ppd.gif|left|200px]]<br /><applet load="1ppd" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1ppd, resolution 2.0Å" /> | ||
| - | '''RESTRAINED LEAST-SQUARES REFINEMENT OF THE SULFHYDRYL PROTEASE PAPAIN TO 2.0 ANGSTROMS'''<br /> | ||
| - | == | + | ==RESTRAINED LEAST-SQUARES REFINEMENT OF THE SULFHYDRYL PROTEASE PAPAIN TO 2.0 ANGSTROMS== |
| - | + | <StructureSection load='1ppd' size='340' side='right'caption='[[1ppd]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [ | + | <table><tr><td colspan='2'>[[1ppd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PPD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PPD FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | [ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene></td></tr> |
| - | [[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ppd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ppd OCA], [https://pdbe.org/1ppd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ppd RCSB], [https://www.ebi.ac.uk/pdbsum/1ppd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ppd ProSAT]</span></td></tr> |
| - | [ | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/PAPA1_CARPA PAPA1_CARPA] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/1ppd_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ppd ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| + | *[[Papain|Papain]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Carica papaya]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Jansonius JN]] | ||
Current revision
RESTRAINED LEAST-SQUARES REFINEMENT OF THE SULFHYDRYL PROTEASE PAPAIN TO 2.0 ANGSTROMS
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