2d9r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (22:21, 26 March 2025) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2d9r.gif|left|200px]]
 
-
{{Structure
+
==Structure of Conserved Protein of Unknown Function PG0164 from Porphyromonas gingivalis [W83]==
-
|PDB= 2d9r |SIZE=350|CAPTION= <scene name='initialview01'>2d9r</scene>, resolution 2.01&Aring;
+
<StructureSection load='2d9r' size='340' side='right'caption='[[2d9r]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2d9r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis_W83 Porphyromonas gingivalis W83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D9R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D9R FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01&#8491;</td></tr>
-
|GENE= PG0164 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 Porphyromonas gingivalis])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam08922 DUF1905]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d9r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d9r OCA], [https://pdbe.org/2d9r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d9r RCSB], [https://www.ebi.ac.uk/pdbsum/2d9r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d9r ProSAT], [https://www.topsan.org/Proteins/MCSG/2d9r TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d9r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d9r OCA], [http://www.ebi.ac.uk/pdbsum/2d9r PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2d9r RCSB]</span>
+
</table>
-
}}
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q7MXL1_PORGI Q7MXL1_PORGI]
-
'''Structure of Conserved Protein of Unknown Function PG0164 from Porphyromonas gingivalis [W83]'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2D9R is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D9R OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d9/2d9r_consurf.spt"</scriptWhenChecked>
-
[[Category: Porphyromonas gingivalis]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Binkowski, T A.]]
+
</jmolCheckbox>
-
[[Category: Collart, F.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d9r ConSurf].
-
[[Category: Hatzos, C.]]
+
<div style="clear:both"></div>
-
[[Category: Joachimiak, A.]]
+
__TOC__
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Moy, S.]]
+
[[Category: Large Structures]]
-
[[Category: hypothetical protein]]
+
[[Category: Porphyromonas gingivalis W83]]
-
[[Category: mcsg]]
+
[[Category: Binkowski TA]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Collart F]]
-
[[Category: porphyromonas gingivali]]
+
[[Category: Hatzos C]]
-
[[Category: protein structure initiative]]
+
[[Category: Joachimiak A]]
-
[[Category: psi]]
+
[[Category: Moy S]]
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:22:47 2008''
+

Current revision

Structure of Conserved Protein of Unknown Function PG0164 from Porphyromonas gingivalis [W83]

PDB ID 2d9r

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2d9r"
Personal tools