DNA polymerase 3D structures

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*DNA polymerase III subunit beta or sliding clamp
*DNA polymerase III subunit beta or sliding clamp
-
**[[1mmi]], [[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit <br />
+
**[[1mmi]], [[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit beta<br />
-
**[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit (mutant) <br />
+
**[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit beta (mutant) <br />
-
**[[3d1e]] - EcDpo III subunit + EcDpo II C-terminal<br />
+
**[[3d1e]] - EcDpo III subunit beta + EcDpo II C-terminal<br />
-
**[[1unn]] - EcDpo III subunit + EcDpo IV little finger<br />
+
**[[1unn]] - EcDpo III subunit beta + EcDpo IV little finger<br />
-
**[[8ciz]] - EcDpo III subunit  + peptide antibiotic <br />
+
**[[2avt]] - Dpo III beta subunit – ''Streptococcus pyogenes''<br />
-
**[[8pat]], [[8pay]] - EcDpo III subunit  + peptide <br />
+
**[[2awa]] - Dpo III beta subunit – ''Streptococcus pneumoniae''<br />
-
**[[8cix]], [[8ciy]] - EcDpo III subunit  + inhibitor<br />
+
**[[4trt]] – DrDpo III beta subunit – ''Deinococcus radiodurans''<br />
-
**[[2avt]] - Dpo III subunit – ''Streptococcus pyogenes''<br />
+
-
**[[2awa]] - Dpo III subunit – ''Streptococcus pneumoniae''<br />
+
-
**[[4trt]] – DrDpo III subunit – ''Deinococcus radiodurans''<br />
+
**[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br />
**[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br />
-
**[[1vpk]] - TmDpo III subunit<br />
+
**[[1vpk]] - TmDpo III beta subunit<br />
-
**[[3t0p]] - Dpo III subunit – ''Eubacterium rectale''<br />
+
**[[3t0p]] - Dpo III beta subunit – ''Eubacterium rectale''<br />
-
**[[6ap4]] - Dpo III subunit – ''Acinetobacter baumannii''<br />
+
**[[6ap4]] - Dpo III beta subunit – ''Acinetobacter baumannii''<br />
-
**[[6amq]] - Dpo III subunit – ''Enterobacter cloacae''<br />
+
**[[6amq]] - Dpo III beta subunit – ''Enterobacter cloacae''<br />
-
**[[5wyp]], [[5wce]], [[6izo]], [[6jir]] - Dpo III subunit – ''Caulobacter crescentus''<br />
+
**[[5wyp]], [[5wce]], [[6izo]], [[6jir]] - Dpo III beta subunit – ''Caulobacter crescentus''<br />
-
**[[5w7z]] - RcDpo III subunit – ''Rickettsia conorii''<br />
+
**[[5w7z]] - RcDpo III beta subunit – ''Rickettsia conorii''<br />
-
**[[6man]] - Dpo III subunit – ''Rickettsia bellii''<br />
+
**[[6man]] - Dpo III beta subunit – ''Rickettsia bellii''<br />
-
**[[6d46]] - RtDpo III subunit – ''Rickettsia typhi''<br />
+
**[[6d46]] - RtDpo III beta subunit – ''Rickettsia typhi''<br />
-
**[[6dlk]] - RrDpo III subunit – ''Rickettsia rickettsii''<br />
+
**[[6dlk]] - RrDpo III beta subunit – ''Rickettsia rickettsii''<br />
-
**[[6d47]] - MmDpo III subunit – ''Mycobacterium marinum''<br />
+
**[[6d47]] - MmDpo III beta subunit – ''Mycobacterium marinum''<br />
-
**[[1jqj]], [[1jql]] - EcDpo III subunit (mutant) <br />
+
**[[1jqj]], [[1jql]] - EcDpo III subunits beta, delta(mutant) <br />
-
**[[4tr6]] - Pol III subunit – Bacillus subtilis<br />
+
**[[4tr6]] - Pol III beta subunit – ''Bacillus subtilis''<br />
-
**[[3p16]], [[3rb9]], [[4tr7]] - MtPol III subunit <br />
+
**[[3p16]], [[3rb9]], [[4tr7]] - MtPol III beta subunit <br />
-
**[[4tr8]], [[6ams]] - PsaPol III subunit – ''Pseudomonas aeruginosa''<br />
+
**[[4tr8]], [[6ams]] - PsaPol III beta subunit – ''Pseudomonas aeruginosa''<br />
-
**[[6pth]] - PsaPol III subunit + griselimycin<br />
+
**[[6pth]] - PsaPol III beta subunit + griselimycin<br />
-
**[[4s3i]], [[4rki]] - HpPol III subunit – ''Helicobacter pylori''<br />
+
**[[4s3i]], [[4rki]] - HpPol III beta subunit – ''Helicobacter pylori''<br />
-
**[[6aig]] - Dpo III subunit – ''Aeropyrum pernix''<br />
+
**[[6aig]] - Dpo III beta subunit – ''Aeropyrum pernix''<br />
-
**[[6deg]] - BbDpo III subunit – ''Bartonella birtlesii''<br />
+
**[[6deg]] - BbDpo III beta subunit – ''Bartonella birtlesii''<br />
-
**[[7rzm]] - Dpo III subunit – ''Stenotrophomonas maltophilia''<br />
+
**[[7rzm]] - Dpo III beta subunit – ''Stenotrophomonas maltophilia''<br />
-
**[[8dt6]] - Dpo III subunit – ''Elizabethkingia anophelis''<br />
+
**[[8dt6]] - Dpo III beta subunit – ''Elizabethkingia anophelis''<br />
*DNA polymerase III subunit beta or sliding clamp complex
*DNA polymerase III subunit beta or sliding clamp complex
-
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]] - EcDpo III subunit + inhibitor<br />
+
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]], [[8cix]], [[8ciy]] - EcDpo III subunit beta + inhibitor<br />
-
**[[3bep]] - EcDpo III subunit + DNA<br />
+
**[[3bep]] - EcDpo III subunit beta + DNA<br />
-
**[[5x06]] - EcDpo III subunit + DnaA regulatory inactivator<br />
+
**[[5x06]] - EcDpo III subunit beta + DnaA regulatory inactivator<br />
-
**[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]], [[6fvl]], [[7az5]], [[7az6]], [[7az7]], [[7az8]], [[7azc]], [[7azd]], [[7aze]], [[7azf]], [[7azg]], [[7azk]], [[7azl]] - EcDpo III subunit + polypeptide<br />
+
**[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]], [[6fvl]], [[7az5]], [[7az6]], [[7az7]], [[7az8]], [[7azc]], [[7azd]], [[7aze]], [[7azf]], [[7azg]], [[7azk]], [[7azl]], [[8pat]], [[8pay]] - EcDpo III beta subunit + polypeptide<br />
-
**[[6fvm]] - EcDpo III subunit (mutant) + P7 peptide<br />
+
**[[8ciz]] - EcDpo III subunit beta + peptide antibiotic <br />
-
**[[5g4q]], [[5g48]], [[5fxt]], [[5fve]] - HpPol III subunit + NSAID drug <br />
+
**[[6fvm]] - EcDpo III beta subunit (mutant) + P7 peptide<br />
-
**[[5frq]] - HpPol III subunit + DNA ligase peptide<br />
+
**[[5g4q]], [[5g48]], [[5fxt]], [[5fve]] - HpPol III beta subunit + NSAID drug <br />
-
**[[5dai]] - TkPol III subunit + FEN-1 peptide <br />
+
**[[5frq]] - HpPol III beta subunit + DNA ligase peptide<br />
-
**[[5ah4]], [[5ah2]], [[5agv]], [[5agu]] – MsPol III subunit + gricelimycin <br />
+
**[[5dai]] - TkPol III beta subunit + FEN-1 peptide <br />
-
**[[6drt]] – T4Dpo III subunit + polypeptide - Enterobacteria phage T4<br />
+
**[[5ah4]], [[5ah2]], [[5agv]], [[5agu]] – MsPol III beta subunit + gricelimycin <br />
-
**[[6dj8]] – Dpo III subunit + polypeptide – ''Borrelia burgdorferi''<br />
+
**[[6drt]] – T4Dpo III beta subunit + polypeptide - Enterobacteria phage T4<br />
-
**[[6fvo]], [[6fvn]] - MtPol III subunit + P7 peptide<br />
+
**[[6dj8]] – Dpo III beta subunit + polypeptide – ''Borrelia burgdorferi''<br />
-
**[[6t7x]] - PaPol III subunit <br />
+
**[[6fvo]], [[6fvn]] - MtPol III beta subunit + P7 peptide<br />
-
**[[4tsz]], [[6t7y]] - PaPol III subunit + peptide<br />
+
**[[6t7x]] - PaPol III beta subunit <br />
-
**[[6t8h]] - PaPol III subunit + Dol II small subunit + DP2 – Cryo EM<br />
+
**[[4tsz]], [[6t7y]] - PaPol III beta subunit + peptide<br />
-
**[[6djk]] - RtDpo III subunit + polypeptide <br />
+
**[[6t8h]] - PaPol III beta subunit + Dol II small subunit + DP2 – Cryo EM<br />
-
**[[6dm6]] - RcPol III subunit + peptide<br />
+
**[[6djk]] - RtDpo III beta subunit + polypeptide <br />
-
**[[6dly]] - MmPol III subunit + peptide<br />
+
**[[6dm6]] - RcPol III beta subunit + peptide<br />
-
**[[6ptv]] - RrPol III subunit + griselimycin<br />
+
**[[6dly]] - MmPol III beta subunit + peptide<br />
-
**[[6ptr]] - BbPol III subunit + griselimycin<br />
+
**[[6ptv]] - RrPol III beta subunit + griselimycin<br />
-
**[[8djq]], [[8dk9]] - Pol III subunit + peptide – ''Mycolicibacterium thermoresistibile''<br />
+
**[[6ptr]] - BbPol III beta subunit + griselimycin<br />
 +
**[[8djq]], [[8dk9]] - Pol III beta subunit + peptide – ''Mycolicibacterium thermoresistibile''<br />
*DNA polymerase III subunit gamma
*DNA polymerase III subunit gamma

Revision as of 07:04, 27 April 2025

3D Structures of DNA polymerase

Updated on 27-April-2025

6ctq, 6ctp, 6cto, 6ctn, 6ctm, 6ctl, 6ctk, 6ctj, 6cti, 6crh, 6crc, 6crb, 6cr9, 6cr8, 6cr7, 6cr6, 6cr5, 6cr4, 6cr3, 6cpq, 6cly, 6bem, 6bel, 6ph6, 6u2o, 6u6b, 6uok, 6uol, 6uom, 6w2m, 7k96 - hDpo  + DNA + nucleotide analog

catalytic+2+3+4 + PCNA + DNA + nucleotide analog – Cryo EM

Terminal deoxynucleotidyl transferase binary complex

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

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