DNA polymerase 3D structures

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Current revision (14:58, 30 April 2025) (edit) (undo)
 
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Line 6: Line 6:
**[[1taq]] – TaDpo I - ''Thermus aquaticus''<br />
**[[1taq]] – TaDpo I - ''Thermus aquaticus''<br />
-
**[[1jxe]] – TaDpo I Stoffel fragment 290-832<br />
+
**[[1jxe]], [[8xjr]] – TaDpo I Stoffel fragment 290-832<br />
**[[5ktq]] – TaDpo I Stoffel fragment + nucleotide<br />
**[[5ktq]] – TaDpo I Stoffel fragment + nucleotide<br />
-
**[[5szt]], [[5e41]], [[6q4v]], [[6q4u]], [[6fbi]], [[6fbh]], [[6fbg]], [[6fbf]], [[6fbe]], [[6fbd]], [[6fbc]], [[5z3n]], [[5yth]], [[5ytg]], [[5ytf]], [[5yte]], [[5ytd]], [[5ytc]], [[5w6k]], [[5w6q]] – TaDpo I Stoffel fragment + DNA + nucleotide derivative<br />
+
**[[5szt]], [[5e41]], [[6q4v]], [[6q4u]], [[6fbi]], [[6fbh]], [[6fbg]], [[6fbf]], [[6fbe]], [[6fbd]], [[6fbc]], [[5z3n]], [[5yth]], [[5ytg]], [[5ytf]], [[5yte]], [[5ytd]], [[5ytc]], [[5w6k]], [[5w6q]], [[8xk7]], [[9fm3]] – TaDpo I Stoffel fragment + DNA + nucleotide derivative<br />
**[[5nkl]] – TaDpo I + DNA + pyridine derivative + pyrrol derivative<br />
**[[5nkl]] – TaDpo I + DNA + pyridine derivative + pyrrol derivative<br />
**[[5o7t]] – TaDpo I (mutant) + DNA + CTP derivative<br />
**[[5o7t]] – TaDpo I (mutant) + DNA + CTP derivative<br />
Line 17: Line 17:
**[[6dsy]], [[6dsx]], [[6dsw]], [[6dsv]], [[6dsu]], [[7k5o]], [[7k5p]], [[7k5r]], [[7k5q]], [[7k5s]], [[7k5t]], [[7k5u]] - GsDpo I + DNA - ''Geobacillus stearothermophilus''<br />
**[[6dsy]], [[6dsx]], [[6dsw]], [[6dsv]], [[6dsu]], [[7k5o]], [[7k5p]], [[7k5r]], [[7k5q]], [[7k5s]], [[7k5t]], [[7k5u]] - GsDpo I + DNA - ''Geobacillus stearothermophilus''<br />
**[[3eyz]], [[6p5c]] - GsDpo I (mutant) + DNA <br />
**[[3eyz]], [[6p5c]] - GsDpo I (mutant) + DNA <br />
-
**[[6mu5]], [[6mu4]], [[6ur2]], [[6ur4]] - GsDpo I + DNA + nucleotide derivative <br />
+
**[[6mu5]], [[6mu4]], [[6ur2]], [[6ur4]], [[8sck]] - GsDpo I + DNA + nucleotide derivative <br />
-
**[[3ez5]], [[6ueu]], [[6ur9]], [[6us5]] - GsDpo I (mutant) + DNA + nucleotide <br />
+
**[[3ez5]], [[6ueu]], [[6ur9]], [[6us5]], [[8scg]], [[8sci]], [[8scj]], [[8scl]], [[8scm]], [[8scn]], [[8sco]], [[8scp]], [[8scq]], [[8scr]], [[8scs]], [[8sct]], [[8scu]] - GsDpo I (mutant) + DNA + nucleotide <br />
-
**[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – ''Geobacillus kaustophilus''<br />
+
**[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – ''Geobacillus kaustophilus<''br />
-
**[[6vdc]], [[6vde]] – MsPol I – ''Mycobacterium smegmatis''<br />
+
**[[6vdc]], [[6vde]] – MsDpo I – ''Mycobacterium smegmatis''<br />
**[[6vdd]] - MsDpo I + DNA + nucleotide derivative <br />
**[[6vdd]] - MsDpo I + DNA + nucleotide derivative <br />
-
**[[7pbk]] – Dpo I – Vibrio phage<br />
 
-
**[[7r0k]] – Dpo I – Thermus phage<br />
 
*DNA polymerase I klenow fragment or Taq polymerase
*DNA polymerase I klenow fragment or Taq polymerase
Line 29: Line 27:
**[[2kzz]], [[1d8y]], [[2kzm]] – EcDpo I - ''Escherichia coli''<br />
**[[2kzz]], [[1d8y]], [[2kzm]] – EcDpo I - ''Escherichia coli''<br />
**[[1qsl]] - EcDpo I + DNA<br />
**[[1qsl]] - EcDpo I + DNA<br />
 +
**[[8oo6]], [[8ooy]] - EcDpo I + DNA – Cryo EM<br />
**[[1kfs]], [[1krp]], [[1ksp]], [[1kln]] - EcDpo I (mutant) + DNA<br />
**[[1kfs]], [[1krp]], [[1ksp]], [[1kln]] - EcDpo I (mutant) + DNA<br />
**[[1kfd]], [[1dpi]] - EcDpo I + nucleotide<br />
**[[1kfd]], [[1dpi]] - EcDpo I + nucleotide<br />
Line 37: Line 36:
**[[4bwm]], [[4bwj]] - TaDpo I + DNA + RNA<br />
**[[4bwm]], [[4bwj]] - TaDpo I + DNA + RNA<br />
**[[3py8]] - TaDpo I (mutant) + DNA<br />
**[[3py8]] - TaDpo I (mutant) + DNA<br />
-
**[[3m8r]], [[3m8s]], [[3lwl]], [[3lwm]], [[1qss]], [[1qsy]], [[1qtm]], [[2ktq]], [[3ktq]], [[4ktq]], [[3rr7]], [[3rr8]], [[3rrg]], [[3rrh]], [[3t3f]], [[4df4]], [[4df8]], [[4dfj]], [[4dfk]], [[4dfm]], [[4dfp]], [[7owf]] - TaDpo I + DNA + nucleotide<br />
+
**[[3m8r]], [[3m8s]], [[3lwl]], [[3lwm]], [[1qss]], [[1qsy]], [[1qtm]], [[2ktq]], [[3ktq]], [[4ktq]], [[3rr7]], [[3rr8]], [[3rrg]], [[3rrh]], [[3t3f]], [[4df4]], [[4df8]], [[4dfj]], [[4dfk]], [[4dfm]], [[4dfp]], [[7owf]], [[9fmf]] - TaDpo I + DNA + nucleotide<br />
**[[3rrg]], [[4n56]], [[4n5s]], [[4xiu]] - TaDpo I (mutant) + DNA + nucleotide<br />
**[[3rrg]], [[4n56]], [[4n5s]], [[4xiu]] - TaDpo I (mutant) + DNA + nucleotide<br />
**[[1xwl]] - GsDpo I <br />
**[[1xwl]] - GsDpo I <br />
-
**[[2xo7]], [[3hp6]], [[3hpo]], [[2hhq]], [[2hhs]], [[2hht]], [[2hhu]], [[2hhv]], [[2hhw]], [[2hhx]], [[2hvh]], [[2hvi]], [[2hw3]], [[1xc9]], [[1ua0]], [[1ua1]], [[1njw]], [[1njx]], [[1njy]], [[1njz]], [[1nk0]], [[1nk4]], [[1nk5]], [[1nk6]], [[1nk7]], [[1nk8]], [[1nk9]], [[1nkb]], [[1nkc]], [[1nke]], [[1l3s]], [[2bdp]], [[4bdp]], [[2xy5]], [[2xy6]], [[2xy7]], [[2y1i]], [[2y1j]], [[3tan]], [[3tap]], [[3taq]], [[3tar]], [[3thv]], [[4b9l]], [[4b9m]], [[4b9n]], [[4b9s]], [[4b9t]], [[4b9u]], [[4b9v]] - GsDpo I + DNA<br />
+
**[[1l3s]], [[1njw]], [[1njx]], [[1njy]], [[1njz]], [[1nk0]], [[1nk4]], [[1nk5]], [[1nk6]], [[1nk7]], [[1nk8]], [[1nk9]], [[1nkb]], [[1nkc]], [[1nke]], [[1ua0]], [[1ua1]], [[1xc9]], [[2bdp]], [[2hhq]], [[2hhs]], [[2hht]], [[2hhu]], [[2hhv]], [[2hhw]], [[2hhx]], [[2hvh]], [[2hvi]], [[2hw3]], [[2xo7]], [[2xy5]], [[2xy6]], [[2xy7]], [[2y1i]], [[2y1j]], [[3hp6]], [[3hpo]], [[3tan]], [[3tap]], [[3taq]], [[3tar]], [[3thv]], [[4b9l]], [[4b9m]], [[4b9n]], [[4b9s]], [[4b9t]], [[4b9u]], [[4b9v]], [[4bdp]] - GsDpo I + DNA<br />
**[[4dsi]], [[4dsj]], [[4dsk]], [[4dsl]], [[4dwi]] - GsDpo I (mutant) + DNA<br />
**[[4dsi]], [[4dsj]], [[4dsk]], [[4dsl]], [[4dwi]] - GsDpo I (mutant) + DNA<br />
**[[3ht3]], [[1u45]], [[1u47]], [[1u48]], [[1u49]], [[1u4b]], [[1l3t]], [[1l3u]], [[1l3v]], [[1l5u]], [[1lv5]], [[3bdp]], [[3ti0]], [[4o0i]], [[4uqg]] - GsDpo I + DNA + nucleotide<br />
**[[3ht3]], [[1u45]], [[1u47]], [[1u48]], [[1u49]], [[1u4b]], [[1l3t]], [[1l3u]], [[1l3v]], [[1l5u]], [[1lv5]], [[3bdp]], [[3ti0]], [[4o0i]], [[4uqg]] - GsDpo I + DNA + nucleotide<br />
 +
**[[8jrb]] - Dpo I – ''Aquifex pyrophilus''<br />
*DNA polymerase II
*DNA polymerase II
Line 49: Line 49:
**[[3k5n]] - EcDpo II (mutant) + DNA<br />
**[[3k5n]] - EcDpo II (mutant) + DNA<br />
**[[3k5o]], [[1q8i]] - EcDpo II (mutant) <br />
**[[3k5o]], [[1q8i]] - EcDpo II (mutant) <br />
-
**[[3o59]], [[5bkh]] - PhDpo II large subunit - ''Pyrococcus horikoshii<''br />
+
**[[3o59]], [[5bkh]] - PhDpo II large subunit - ''Pyrococcus horikoshii''<br />
**[[2kxe]] - PhDpo II small subunit<br />
**[[2kxe]] - PhDpo II small subunit<br />
**[[1qqc]] – DeDpo II – ''Desulfurococcus''<br />
**[[1qqc]] – DeDpo II – ''Desulfurococcus''<br />
Line 55: Line 55:
**[[5ihe]] - PaDpo II small subunit <br />
**[[5ihe]] - PaDpo II small subunit <br />
**[[6hmf]] - PaDpo II small subunit (mutant)<br />
**[[6hmf]] - PaDpo II small subunit (mutant)<br />
 +
**[[8ppu]] - PaDpo II small subunit + PCNA + DNA + nucleotide – Cryo EM<br />
 +
**[[8ppt]], [[8ppv]] - PaDpo II small subunit (mutant) + PCNA + DP2 + DNA + nucleotide – Cryo EM<br />
 +
**[[9f29]], [[9f2a]] - PaDpo II small subunit + RPA32 – Cryo EM<br />
**[[6hms]] - PaDpo II small+large subunits + DNA – Cryo EM <br />
**[[6hms]] - PaDpo II small+large subunits + DNA – Cryo EM <br />
**[[6knb]], [[6knc]] - TkPol II small+large subunits + PCNA + DNA - ''Thermococcus kodakarensis'' – Cryo EM <br />
**[[6knb]], [[6knc]] - TkPol II small+large subunits + PCNA + DNA - ''Thermococcus kodakarensis'' – Cryo EM <br />
Line 65: Line 68:
**[[2hnh]], [[2hqa]] - EcDpo III subunit alpha catalytic fragment<br />
**[[2hnh]], [[2hqa]] - EcDpo III subunit alpha catalytic fragment<br />
**[[4jom]] - EcDpo III alpha subunit catalytic fragment (mutant)<br />
**[[4jom]] - EcDpo III alpha subunit catalytic fragment (mutant)<br />
-
**[[5m1s]], [[5fkw]], [[5fkv]], [[5fku]] - EcDpo III alpha (mutant) beta, epsilon subunits + DNA – Cryo EM<br />
+
**[[5m1s]], [[5fkw]], [[5fkv]], [[5fku]] - EcDpo III alpha (mutant), beta, epsilon subunits + DNA – Cryo EM<br />
**[[1ok7]] - EcDpo III residues 1-366 + EcDpo IV C-terminal<br />
**[[1ok7]] - EcDpo III residues 1-366 + EcDpo IV C-terminal<br />
**[[2hpi]], [[2hpm]] - TaDpo III alpha subunit<br />
**[[2hpi]], [[2hpm]] - TaDpo III alpha subunit<br />
**[[3e0d]] - TaDpo III alpha subunit + DNA<br />
**[[3e0d]] - TaDpo III alpha subunit + DNA<br />
**[[3f2b]], [[3f2c]], [[3f2d]], [[4iqj]] – GkDpo III alpha subunit + DNA + nucleotide <br />
**[[3f2b]], [[3f2c]], [[3f2d]], [[4iqj]] – GkDpo III alpha subunit + DNA + nucleotide <br />
-
**[[1zd7]], [[1zde]], [[3nzm]], [[5ol5]], [[5ol1]] - SyDpo III alpha subunit – Synechocystis<br />
+
**[[1zd7]], [[1zde]], [[3nzm]], [[5ol5]], [[5ol1]] - SyDpo III alpha subunit – ''Synechocystis''<br />
**[[4gig]] - SyDpo III alpha subunit (mutant) <br />
**[[4gig]] - SyDpo III alpha subunit (mutant) <br />
-
**[[2keq]], [[4kl5]], [[4kl6]] - NpDpo III alpha subunit – Nostoc punctiforme<br />
+
**[[2keq]], [[4kl5]], [[4kl6]] - NpDpo III alpha subunit – ''Nostoc punctiforme''<br />
**[[4lx3]], [[4qfq]] - NpDpo III alpha subunit + nucleic acid binding tRNA/helicase<br />
**[[4lx3]], [[4qfq]] - NpDpo III alpha subunit + nucleic acid binding tRNA/helicase<br />
-
**[[5lew]] - MtPol III alpha subunit – Mycobacterrium tuberculosis<br />
+
**[[5lew]] - MtPol III alpha subunit – ''Mycobacterrium tuberculosis''<br />
**[[7pu7]] - MtDpo III alpha subunit + DNA<br />
**[[7pu7]] - MtDpo III alpha subunit + DNA<br />
Line 91: Line 94:
**[[6ap4]] - Dpo III beta subunit – ''Acinetobacter baumannii''<br />
**[[6ap4]] - Dpo III beta subunit – ''Acinetobacter baumannii''<br />
**[[6amq]] - Dpo III beta subunit – ''Enterobacter cloacae''<br />
**[[6amq]] - Dpo III beta subunit – ''Enterobacter cloacae''<br />
-
**[[5wyp]], [[5wce]], [[6izo]], [[6jir]] - Dpo III beta subunit – ''Caulobacter crescentus''<br />
+
**[[5wce]], [[6izo]], [[6jir]] - Dpo III beta subunit – ''Caulobacter crescentus''<br />
**[[5w7z]] - RcDpo III beta subunit – ''Rickettsia conorii''<br />
**[[5w7z]] - RcDpo III beta subunit – ''Rickettsia conorii''<br />
**[[6man]] - Dpo III beta subunit – ''Rickettsia bellii''<br />
**[[6man]] - Dpo III beta subunit – ''Rickettsia bellii''<br />
Line 97: Line 100:
**[[6dlk]] - RrDpo III beta subunit – ''Rickettsia rickettsii''<br />
**[[6dlk]] - RrDpo III beta subunit – ''Rickettsia rickettsii''<br />
**[[6d47]] - MmDpo III beta subunit – ''Mycobacterium marinum''<br />
**[[6d47]] - MmDpo III beta subunit – ''Mycobacterium marinum''<br />
-
**[[1jqj]], [[1jql]] - EcDpo III subunit beta,delta(mutant) <br />
+
**[[1jqj]], [[1jql]] - EcDpo III subunits beta, delta(mutant) <br />
-
**[[4tr6]] - Pol III beta subunit – Bacillus subtilis<br />
+
**[[4tr6]] - Pol III beta subunit – ''Bacillus subtilis''<br />
**[[3p16]], [[3rb9]], [[4tr7]] - MtPol III beta subunit <br />
**[[3p16]], [[3rb9]], [[4tr7]] - MtPol III beta subunit <br />
-
**[[4tr8]], [[6ams]] - PsaPol III beta subunit –'' Pseudomonas aeruginosa''<br />
+
**[[4tr8]], [[6ams]] - PsaPol III beta subunit – ''Pseudomonas aeruginosa''<br />
**[[6pth]] - PsaPol III beta subunit + griselimycin<br />
**[[6pth]] - PsaPol III beta subunit + griselimycin<br />
**[[4s3i]], [[4rki]] - HpPol III beta subunit – ''Helicobacter pylori''<br />
**[[4s3i]], [[4rki]] - HpPol III beta subunit – ''Helicobacter pylori''<br />
Line 110: Line 113:
*DNA polymerase III subunit beta or sliding clamp complex
*DNA polymerase III subunit beta or sliding clamp complex
-
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]] - EcDpo III subunit beta + inhibitor<br />
+
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]], [[8cix]], [[8ciy]] - EcDpo III subunit beta + inhibitor<br />
**[[3bep]] - EcDpo III subunit beta + DNA<br />
**[[3bep]] - EcDpo III subunit beta + DNA<br />
**[[5x06]] - EcDpo III subunit beta + DnaA regulatory inactivator<br />
**[[5x06]] - EcDpo III subunit beta + DnaA regulatory inactivator<br />
-
**[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]], [[6fvl]], [[7az5]], [[7az6]], [[7az7]], [[7az8]], [[7azc]], [[7azd]], [[7aze]], [[7azf]], [[7azg]], [[7azk]], [[7azl]] - EcDpo III beta subunit + polypeptide<br />
+
**[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]], [[6fvl]], [[7az5]], [[7az6]], [[7az7]], [[7az8]], [[7azc]], [[7azd]], [[7aze]], [[7azf]], [[7azg]], [[7azk]], [[7azl]], [[8pat]], [[8pay]] - EcDpo III beta subunit + polypeptide<br />
 +
**[[8ciz]] - EcDpo III subunit beta + peptide antibiotic <br />
**[[6fvm]] - EcDpo III beta subunit (mutant) + P7 peptide<br />
**[[6fvm]] - EcDpo III beta subunit (mutant) + P7 peptide<br />
**[[5g4q]], [[5g48]], [[5fxt]], [[5fve]] - HpPol III beta subunit + NSAID drug <br />
**[[5g4q]], [[5g48]], [[5fxt]], [[5fve]] - HpPol III beta subunit + NSAID drug <br />
Line 130: Line 134:
**[[6ptv]] - RrPol III beta subunit + griselimycin<br />
**[[6ptv]] - RrPol III beta subunit + griselimycin<br />
**[[6ptr]] - BbPol III beta subunit + griselimycin<br />
**[[6ptr]] - BbPol III beta subunit + griselimycin<br />
 +
**[[8djq]], [[8dk9]] - Pol III beta subunit + peptide – ''Mycolicibacterium thermoresistibile''<br />
*DNA polymerase III subunit gamma
*DNA polymerase III subunit gamma
Line 136: Line 141:
**[[1njf]], [[1njg]] - EcDpo III subunit gamma N-terminal domains 1-2<br />
**[[1njf]], [[1njg]] - EcDpo III subunit gamma N-terminal domains 1-2<br />
**[[2gno]] - TmDpo III gamma subunit<br />
**[[2gno]] - TmDpo III gamma subunit<br />
-
**[[1xxh]], [[1jr3]] - EcDpo III subunit gamma, delta,delta’ <br />
+
**[[1xxh]], [[1jr3]] - EcDpo III subunits gamma, delta, delta’ <br />
-
**[[1xxi]] - EcDpo III subunit gamma, delta,delta’ + nucleotide<br />
+
**[[1xxi]] - EcDpo III subunits gamma, delta, delta’ + nucleotide<br />
*DNA polymerase III subunit delta
*DNA polymerase III subunit delta
-
**[[1jqj]], [[1jql]] - EcDpo III subunit beta,delta(mutant) <br />
+
**[[1jqj]], [[1jql]] - EcDpo III subunits beta, delta (mutant) <br />
**[[1a5t]] - EcDpo III subunit delta’ <br />
**[[1a5t]] - EcDpo III subunit delta’ <br />
-
**[[1xxh]], [[1jr3]] - EcDpo III subunit gamma, delta,delta’ <br />
+
**[[1xxh]], [[1jr3]] - EcDpo III subunits gamma, delta, delta’ <br />
-
**[[1xxi]] - EcDpo III subunit gamma, delta,delta’ + nucleotide<br />
+
**[[1xxi]] - EcDpo III subunits gamm. delta, delta’ + nucleotide<br />
-
**[[3glh]] - EcDpo III subunit delta,delta’,tau<br />
+
**[[3glh]] - EcDpo III subunits delta, delta’, tau<br />
-
**[[3glf]] - EcDpo III subunitdelta,delta’,tau + DNA<br />
+
**[[3glf]] - EcDpo III subunits delta, delta’, tau + DNA<br />
-
**[[3gli]] - EcDpo III subunit delta,delta’,tau, zeta + DNA<br />
+
**[[3glg]] - EcDpo III subunits delta, delta’, tau (mutant) + DNA<br />
-
**[[3glg]] - EcDpo III subunit delta,delta’,tau(mutant) + DNA<br />
+
**[[3gli]] - EcDpo III subunits delta, delta’, tau, xi + DNA<br />
*DNA polymerase III subunit epsilon
*DNA polymerase III subunit epsilon
Line 154: Line 159:
**[[2gui]] – EcDpo III subunit epsilon N-terminal<br />
**[[2gui]] – EcDpo III subunit epsilon N-terminal<br />
**[[1j53]], [[1j54]] - EcDpo III subunit epsilon N-terminal exonuclease domain<br />
**[[1j53]], [[1j54]] - EcDpo III subunit epsilon N-terminal exonuclease domain<br />
-
**[[2ido]] - EcDpo III subunit epsilon+ HOT protein<br />
+
**[[2ido]] - EcDpo III subunit epsilon + HOT protein<br />
-
**[[4gx8]] - EcDpo III ε subunit/ EcDpo III α subunit<br />
+
**[[9f6k]] - EcDpo III subunit epsilon + DNA – Cryo EM<br />
-
**[[4gx9]] - EcDpo III ε subunit/ EcDpo III α subunit (mutant)<br />
+
**[[9f6d]] - EcDpo III subunit epsilon + PCNA + DNA – Cryo EM<br />
-
**[[2xy8]] - EcDpo III subunit epsilon, theta<br />
+
**[[4gx8]] - EcDpo III epsilon subunit/ EcDpo III alpha subunit<br />
 +
**[[4gx9]] - EcDpo III epsilon subunit/ EcDpo III alpha subunit (mutant)<br />
 +
**[[2xy8]] - EcDpo III subunits epsilon, theta<br />
*DNA polymerase III subunit tau
*DNA polymerase III subunit tau
**[[2aya]] - EcDpo III subunit tau<br />
**[[2aya]] - EcDpo III subunit tau<br />
-
**[[3glh]] - EcDpo III subunit delta, delta', tau<br />
 
-
**[[3glf]] - EcDpo III subunit delta, delta', tau DNA<br />
 
-
**[[3glg]] - EcDpo III subunit delta, delta', tau (mutant) + DNA<br />
 
- 
-
*DNA polymerase III subunit xi
 
- 
-
**[[3gli]] - EcDpo III subunit delta, delta', tau, xi + DNA<br />
 
*DNA polymerase III subunit theta
*DNA polymerase III subunit theta
Line 176: Line 176:
*DNA polymerase III subunit chi+phi
*DNA polymerase III subunit chi+phi
-
**[[1em8]] - EcDpo III subunit chi, phi<br />
+
**[[1em8]] - EcDpo III subunits chi,phi<br />
-
**[[3sxu]] - EcDpo III subunit chi, phi + peptide<br />
+
**[[3sxu]] - EcDpo III subunits chi,phi + peptide<br />
 +
 
 +
*DNA polymerase III subunit beta+delta+delta’+tau
 +
 
 +
**[[8val]], [[8vam]], [[8van]], [[8vap]], [[8vaq]], [[8var]], [[8vas]], [[8vat]] - EcDpo III + DNA – Cryo EM<br />
 +
 
 +
*DNA polymerase III subunit beta+delta+delta’+tau+psi or clamp loader
 +
 
 +
**[[8gj0]], [[8gj1]], [[8gj2]], [[8gj3]] - EcDpo III + DNA – Cryo EM<br />
 +
 
 +
*DNA polymerase III subunit gamma+delta+delta’+tau+psi or clamp loader
 +
 
 +
**[[8giy]], [[8giz]] - EcDpo III + nucleotide– Cryo EM<br />
*DNA polymerase IV
*DNA polymerase IV
**[[4ir1]], [[4ir9]], [[4irc]], [[4ird]], [[4irk]], [[5zlv]], [[5yye]], [[5yyd]], [[5yv3]], [[5yv2]], [[5yv1]], [[5yv0]], [[5yuz]], [[5yuy]], [[5yux]], [[5yuw]], [[5yuv]], [[5yuu]], [[5yut]], [[5yus]], [[5yur]] - EcPol IV + DNA<br />
**[[4ir1]], [[4ir9]], [[4irc]], [[4ird]], [[4irk]], [[5zlv]], [[5yye]], [[5yyd]], [[5yv3]], [[5yv2]], [[5yv1]], [[5yv0]], [[5yuz]], [[5yuy]], [[5yux]], [[5yuw]], [[5yuv]], [[5yuu]], [[5yut]], [[5yus]], [[5yur]] - EcPol IV + DNA<br />
-
**[[4r8u]], [[5c5j]], [[4q45]], [[4q44]], [[4q43]], [[6ig1]] - EcPol IV + DNA + nucleotide<br />
+
**[[4q45]], [[4q44]], [[4q43]], [[4r8u]], [[5c5j]], [[6ig1]] - EcPol IV + DNA + nucleotide<br />
**[[6jup]], [[6juq]] - EcPol IV (mutant) + DNA + nucleotide<br />
**[[6jup]], [[6juq]] - EcPol IV (mutant) + DNA + nucleotide<br />
**[[2rdi]] - SsPol IV <br />
**[[2rdi]] - SsPol IV <br />
-
**[[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[2xca]], [[2xcp]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]], [[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4ruc]], [[4rua]], [[4tqr]], [[4tqs]], [[5edw]], [[6vg6]], [[6vgm]], [[6vkp]], [[6vnp]], [[7kle]], [[7klf]] - SsPol IV + DNA + nucleotide<br />
+
**[[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[2xca]], [[2xcp]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]], [[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4ruc]], [[4rua]], [[4tqr]], [[4tqs]], [[5edw]], [[6vg6]], [[6vgm]], [[[6vkp]], [6vnp]], [[7kle]], [[7klf]] - SsPol IV + DNA + nucleotide<br />
**[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsPol IV (mutant) + DNA + nucleotide <br />
**[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsPol IV (mutant) + DNA + nucleotide <br />
-
**[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]], [[4rzr]], [[6l84]], [[6l97]] - SsPol IV + DNA<br />
+
**[[1ryr]], [[1rys]], [[2ago]], [[2v4q]], [[2v4r]], [[2w9a]], [[2w9b]], [[2w9c]], [[2xc9]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3m9m]], [[3m9n]], [[3m9o]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3qz7]], [[3qz8]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4fbt]], [[4fbu]], [[4g3i]], [[4hyk]], [[4rzr]], [[6l84]], [[6l97]] - SsPol IV + DNA<br />
**[[3fds]] – SsPol IV + PCNA B + PCNA C<br />
**[[3fds]] – SsPol IV + PCNA B + PCNA C<br />
-
**[[3bq2]], [[3bq0]] – SaPol IV + DNA – ''Sulfolobus acidocaldarius''<br />
+
**[[3bq2]], [[3bq0]] – SaPol IV + DNA – Sulfolobus acidocaldarius<br />
**[[3bq1]], [[4f4w]], [[4f4x]], [[4f4y]], [[4f4z]], [[4f50]] - SaPol IV + DNA + nucleotide<br />
**[[3bq1]], [[4f4w]], [[4f4x]], [[4f4y]], [[4f4z]], [[4f50]] - SaPol IV + DNA + nucleotide<br />
**[[4nlg]] - SaPol IV (mutant) + DNA<br />
**[[4nlg]] - SaPol IV (mutant) + DNA<br />
Line 212: Line 224:
**[[5ikn]] - T7Dpo + thioredoxin + DNA primase/helicase<br />
**[[5ikn]] - T7Dpo + thioredoxin + DNA primase/helicase<br />
-
*DNA polymerase
+
*Viral DNA polymerase
**[[2gv9]] – HsvDpo – Herpes simplex virus<br />
**[[2gv9]] – HsvDpo – Herpes simplex virus<br />
**[[7luf]] – HsvDpo + DNA<br />
**[[7luf]] – HsvDpo + DNA<br />
 +
**[[8vq2]] – HsvDpo + DNA + inhibitor<br />
 +
**[[8ojc]], [[8ojd]] – HsvDpo + DNA – Cryo EM<br />
 +
**[[8exx]], [[8oj6]], [[8oj7]], [[8oja]], [[8ojb]], [[8v1q]], [[8v1r]], [[8v1s]] – HsvDpo + Pol processivity factor + DNA – Cryo EM<br />
 +
**[[8v1t]] – HsvDpo + Pol processivity factor + DNA + drug – Cryo EM<br />
**[[5n2g]], [[5n2e]] – VvDpo – Vaccinia virus<br />
**[[5n2g]], [[5n2e]] – VvDpo – Vaccinia virus<br />
**[[5n2h]] – VvDpo (mutant) <br />
**[[5n2h]] – VvDpo (mutant) <br />
 +
**[[8q3r]] – VvDpo + Pol processivity factor + E4R – Cryo EM<br />
**[[5mdn]] – Dpo – ''Pyrobaculum calidifontis''<br />
**[[5mdn]] – Dpo – ''Pyrobaculum calidifontis''<br />
**[[1bgx]] – TaDpo + TP7 antibody<br />
**[[1bgx]] – TaDpo + TP7 antibody<br />
Line 225: Line 242:
**[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br />
**[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br />
**[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br />
**[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br />
-
**[[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]], [[5gnq]] - EpDpo (mutant) + DNA + nucleotide<br />
+
**[[1ig9]], [[1q9x]], [[1q9y]], [[2dy4]], [[2ozs]], [[2p5g]], [[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]] - EpDpo (mutant) + DNA + nucleotide<br />
**[[1clq]], [[3iuq]], [[7f4y]] - EpDpo + DNA + nucleotide<br />
**[[1clq]], [[3iuq]], [[7f4y]] - EpDpo + DNA + nucleotide<br />
**[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br />
**[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br />
Line 231: Line 248:
**[[1noy]] – T4Dpo + DNA <br />
**[[1noy]] – T4Dpo + DNA <br />
**[[1noz]] – T4Dpo residues 1-388<br />
**[[1noz]] – T4Dpo residues 1-388<br />
-
**[[2ex3]] – BpDpo (mutant) + DNA terminal protein – Bacillus phage 29<br />
+
**[[2ex3]] – BpDpo (mutant) + DNA terminal protein – Bacillus phage phi29<br />
**[[2py5]], [[2pzs]], [[1xhz]], [[1xi1]] – BpDpo (mutant) + DNA <br />
**[[2py5]], [[2pzs]], [[1xhz]], [[1xi1]] – BpDpo (mutant) + DNA <br />
**[[2pyj]], [[2pyl]] - BpDpo (mutant) + DNA + nucleotide<br />
**[[2pyj]], [[2pyl]] - BpDpo (mutant) + DNA + nucleotide<br />
**[[1xhx]] - BpDpo (mutant) <br />
**[[1xhx]] - BpDpo (mutant) <br />
 +
**[[8k8s]] - mpvDpo (mutant) + DNA + nucleotide – monkeypox virus – Cryo EM<br />
 +
**[[8wpk]], [[8wpp]] - mpvDpo + Pol processivity factor – Cryo EM<br />
 +
**[[8wpe]], [[8wpf]], [[9enp]] - mpvDpo + Pol processivity factor + DNA + nucleotide – Cryo EM<br />
 +
**[[8hpa]], [[8k8u]], [[9k9t]], ]]9k9v]] - mpvDpo + Pol processivity factor + E4R + DNA – Cryo EM<br />
 +
**[[9hlz]], [[8hm0]] - mpvDpo + Pol processivity factor + E4R – Cryo EM<br />
 +
**[[8hdz]], [[8hoy]], [[8j86]], [[9k9s]], [[9k9u]] - mpvDpo (mutant) + Pol processivity factor + E4R – Cryo EM<br />
 +
**[[8hg1]], [[8j8f]], [[9k9r]] - mpvDpo + Pol processivity factor + E4R + DNA + nucleotide – Cryo EM<br />
 +
**[[8j8g]] - mpvDpo + Pol processivity factor + E4R + DNA + drug – Cryo EM<br />
 +
**[[8ywg]] – AsfvDpo – Cryo EM<br />
 +
**[[8ywi]], [[8ywm]] – AsfvDpo + DNA – Cryo EM<br />
 +
**[[7pbk]] – Dpo I – Vibrio phage<br />
 +
**[[7r0k]] – Dpo I – Thermus phage<br />
 +
 +
*Bacterial DNA polymerase
 +
**[[3a2f]] - PfDpo + PCNA - ''Pyrococcus furiosus''<br />
**[[3a2f]] - PfDpo + PCNA - ''Pyrococcus furiosus''<br />
**[[2jgu]], [[4ahc]] – PfDpo<br />
**[[2jgu]], [[4ahc]] – PfDpo<br />
**[[4ail]] – PfDpo + DNA<br />
**[[4ail]] – PfDpo + DNA<br />
-
**[[1tgo]], [[7b06]], [[7b07]], [[7b08]] - TgDpo – ''Thermococcus gorgonarius''<br />
+
**[[1tgo]], [[7b06]], [[7b07]], [[7b08]], [[9gp8]] - TgDpo – ''Thermococcus gorgonarius''<br />
**[[2vwk]] - TgDpo (mutant) <br />
**[[2vwk]] - TgDpo (mutant) <br />
**[[7b0h]] – TgDpo + DNA <br />
**[[7b0h]] – TgDpo + DNA <br />
Line 246: Line 278:
**[[5vu9]], [[5vu8]], [[5vu7]], [[5vu6]], [[5omf]] - TkDpo + DNA<br />
**[[5vu9]], [[5vu8]], [[5vu7]], [[5vu6]], [[5omf]] - TkDpo + DNA<br />
**[[4k8z]] - TkDpo (mutant) + DNA<br />
**[[4k8z]] - TkDpo (mutant) + DNA<br />
 +
**[[9emi]] - TkDpo + DNA + nucleotide derivative<br />
**[[6q4t]] - TkDpo (mutant) + DNA + nucleotide derivative<br />
**[[6q4t]] - TkDpo (mutant) + DNA + nucleotide derivative<br />
-
**[[1qht]] - ThDpo (mutant) – Thermococcus<br />
+
**[[1qht]] - ThDpo (mutant) – ''Thermococcus''<br />
**[[4k8x]], [[5omv]], [[5omq]], [[6is7]], [[6isf]], [[6isg]], [[6ish]], [[6isi]] - ThDpo (mutant) + DNA<br />
**[[4k8x]], [[5omv]], [[5omq]], [[6is7]], [[6isf]], [[6isg]], [[6ish]], [[6isi]] - ThDpo (mutant) + DNA<br />
**[[4yfu]] - Dpo (mutant) + DNA - Bacillus<br />
**[[4yfu]] - Dpo (mutant) + DNA - Bacillus<br />
**[[1d5a]] – DeDpo <br />
**[[1d5a]] – DeDpo <br />
 +
**[[7sxq]] - PfDpo (mutant) – ''Plasmodium falciparum''<br />
 +
**[[9dg1]] – PfDpo + DNA <br />
 +
**[[8s87]] – TkDpo <br />
 +
**[[8s84]] - TkDpo + DNA + nucleotide<br />
 +
**[[7r06]], [[7z0z]] – LlDpo – ''Lactococcus lactis''<br />
 +
**[[8oz7]] – LlDpo + DNA <br />
*DNA polymerase alpha
*DNA polymerase alpha
Line 260: Line 299:
**[[4bpx]] - hDpo α catalytic subunit + DNA primase small subunit <br />
**[[4bpx]] - hDpo α catalytic subunit + DNA primase small subunit <br />
**[[5exr]] - hDpo α catalytic+B subunits + DNA primase small+large subunits <br />
**[[5exr]] - hDpo α catalytic+B subunits + DNA primase small+large subunits <br />
 +
**[[8qj7]], [[8vy3]], [[9c8v]] - hDpo α catalytic+B subunits + DNA primase small+large subunits – Cryo EM<br />
 +
**[[8d9d]] - hDpo α catalytic+B subunits + DNA primase small+large subunits + DNA + nucleotide – Cryo EM<br />
 +
**[[8d96]] - hDpo α catalytic subunit + DNA primase large subunit + DNA – Cryo EM<br />
 +
**[[9mj5]] - hDpo α catalytic subunit + RPA + DNA – Cryo EM<br />
 +
**[[8b9c]], [[8b9d]] - hDpo α in replisome complex – Cryo EM<br />
**[[7opl]] - hDpo α catalytic+B subunits + DNA primase small+large subunits + Nsp1 – Cryo EM<br />
**[[7opl]] - hDpo α catalytic+B subunits + DNA primase small+large subunits + Nsp1 – Cryo EM<br />
-
**[[7u5c]], [[8d08]] - hDpo α catalytic+B subunits + DNA primase small+large subunits + CST + DNA – Cryo EM<br />
+
**[[7u5c]], [[8d08]], [[8d0b]], [[8d0k]] - hDpo α catalytic+B subunits + DNA primase small+large subunits + CST + DNA – Cryo EM<br />
**[[4q5v]] - hDpo α catalytic subunit + DNA + RNA + aphidicolin <br />
**[[4q5v]] - hDpo α catalytic subunit + DNA + RNA + aphidicolin <br />
**[[4qcl]], [[7n2m]] - hDpo α catalytic subunit + DNA + RNA + nucleotide <br />
**[[4qcl]], [[7n2m]] - hDpo α catalytic subunit + DNA + RNA + nucleotide <br />
**[[2keb]] - hDpo alphaB - NMR <br />
**[[2keb]] - hDpo alphaB - NMR <br />
**[[1n5g]], [[1k0p]], [[1k18]] - hDpo alpha zinc finger domain – NMR<br />
**[[1n5g]], [[1k0p]], [[1k18]] - hDpo alpha zinc finger domain – NMR<br />
-
**[[7uy7]], [[7uy8]] - Dpo α B subunit + DNA primase small+large subunits – ''Tetrahymena thermophile'' - Cryo EM<br />
+
**[[8g99]], [[8v5n]], [[8v5o]], [[8v6i]] - fDpo α catalytic+B subunits + DNA primase large subunit – frog – Cryo EM <br />
 +
**[[8g9f]], [[8v5m]], [[8v6j]] - fDpo α catalytic+B subunits + DNA primase large subunit + DNA – Cryo EM <br />
 +
**[[8v6g]], [[8v6h]] - fDpo α catalytic+B subunits + DNA primase large subunit + DNA + RNA – Cryo EM <br />
 +
**[[8ucu]], [[8ucv]], [[8ucw]] - fDpo α catalytic subunit 335-1458 + DNA + RNA – Cryo EM <br />
 +
**[[8g9l]], [[8g9o]] - fDpo α catalytic subunit 335-1458 + DNA primase large subunit + DNA + RNA – Cryo EM <br />
 +
**[[8g9n]] - fDpo α catalytic subunit 335-1458 + DNA + RNA + nucleotide – Cryo EM <br />
 +
**[[7uy7]], [[7uy8l]] - Dpo α B subunit + DNA primase small+large subunits – ''Tetrahymena thermophile'' - Cryo EM<br />
*DNA polymerase beta
*DNA polymerase beta
-
**[[4ppx]] - hDpo + spiroiminohydantoin + DNA<br />
+
**[[4ppx]] - hDpo beta + spiroiminohydantoin + DNA<br />
-
**[[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[1zqe]], [[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4klp]], [[4klq]], [[4kls]], [[4klt]], [[4klu]], [[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[4pgy]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]], [[5wo0]], [[5wnz]], [[5wny]], [[5wnx]], [[5vs4]], [[5vs3]], [[5vs2]], [[5vs1]], [[5vs0]], [[5vrz]], [[5vry]], [[5vrx]], [[5vrw]], [[5vez]], [[5v1r]], [[5v1p]], [[5v1o]], [[5v1n]], [[5v1j]], [[5v1i]], [[5v1h]], [[5v1g]], [[5v1f]], [[5ugp]], [[5ugo]], [[5ugn]], [[5u9h]], [[5u8i]], [[5u8h]], [[5u8g]], [[5u2t]], [[5u2s]], [[5u2r]], [[5tzv]], [[5tbc]], [[5tbb]], [[5tba]], [[5tb9]], [[5tb8]], [[5j2k]], [[5j2j]], [[5j2i]], [[5j2h]], [[5j2g]], [[5j2f]], [[5j2e]], [[5j2d]], [[5j2c]], [[5j2b]], [[5j2a]], [[5j29]], [[5j0y]], [[5j0x]], [[5j0w]], [[5j0u]], [[5j0t]], [[5j0s]], [[5j0r]], [[5j0q]], [[5j0p]], [[5j0o]], [[5dbc]], [[5dbb]], [[5dba]], [[5db9]], [[5db8]], [[5db7]], [[5db6]], [[6g2q]], [[6ph5]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icg]], [[7ich]], [[7icj]], [[7ick]], [[7icm]], [[7icn]], [[7ico]], [[7icp]], [[7icq]], [[7icr]], [[7ics]], [[7ict]], [[7icu]], [[7icv]], [[7k97]], [[8icb]], [[8icc]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]] - hDpo beta + DNA<br />
+
**[[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[1zqe]], [[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4klq]], [[4kls]], [[4klt]], [[4klu]], [[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[4pgy]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]], [[5wo0]], [[5wnz]], [[5wny]], [[5wnx]], [[5vs4]], [[5vs3]], [[5vs2]], [[5vs1]], [[5vs0]], [[5vrz]], [[5vry]], [[5vrx]], [[5vrw]], [[5vez]], [[5v1r]], [[5v1p]], [[5v1o]], [[5v1n]], [[5v1j]], [[5v1i]], [[5v1h]], [[5v1g]], [[5v1f]], [[5ugp]], [[5ugo]], [[5ugn]], [[5u9h]], [[5u8i]], [[5u8h]], [[5u8g]], [[5u2t]], [[5u2s]], [[5u2r]], [[5tzv]], [[5tbc]], [[5tbb]], [[5tba]], [[5tb9]], [[5tb8]], [[5j2k]], [[5j2j]], [[5j2i]], [[5j2h]], [[5j2g]], [[5j2f]], [[5j2e]], [[5j2d]], [[5j2c]], [[5j2b]], [[5j2a]], [[5j29]], [[5j0y]], [[5j0x]], [[5j0w]], [[5j0u]], [[5j0t]], [[5j0s]], [[5j0r]], [[5j0q]], [[5j0p]], [[5j0o]], [[5dbc]], [[5dbb]], [[5dba]], [[5db9]], [[5db8]], [[5db7]], [[5db6]], [[6g2q]], [[6ph5]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icg]], [[7ich]], [[7icj]], [[7ick]], [[7icm]], [[7icn]], [[7ico]], [[7icp]], [[7icq]], [[7icr]], [[7ics]], [[7ict]], [[7icu]], [[7icv]], [[7k97]], [[8icb]], [[8icc]], [[8vf8]], [[8vf9]], [[8vfa]], [[8vfb]], [[8vfc]], [[8vfe]], [[8vff]], [[9vfg]], [[8vfi]], [[8vfj]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]] - hDpo beta + DNA<br />
-
**[[1bpy]], [[1mq2]], [[1mq3]], [[1zjn]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4do9]], [[4doa]], [[4dob]], [[4doc]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]], [[4z6f]], [[4z6e]], [[4z6d]], [[4z6c]], [[4yn4]], [[4ymo]], [[4ymn]], [[4ymm]], [[4rt3]], [[4rt2]], [[4rq8]], [[4rq7]], [[4rq6]], [[4rq5]], [[4rq4]], [[4rq3]], [[4rq2]], [[4rq1]], [[4rq0]], [[4rpz]], [[4rpy]], [[4rpx]], [[4php]], [[4phe]], [[4ph5]], [[5eoz]], [[5bpc]], [[5bom]], [[5bol]], [[7mz0]], [[7mz1]], [[7mz2]], [[7mz3]], [[7mz4]], [[7mzb]], [[7rbe]], [[7rbf]], [[7rbg]], [[7rbh]], [[7rbi]], [[7rbj]], [[7rbk]], [[7rbl]], [[7rbm]], [[7rbn]], [[7rbo]], [[7s9j]], [[7s9k]], [[7s9l]], [[7s9m]], [[7s9n]], [[7s9o]], [[7a9p]], [[7s9q]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icy]], [[8icz]], [[9ica]], [[9icb]], [[9icc]], [[9ice]], [[9icf]], [[9icg]], [[9ich]], [[9ici]], [[9icn]], [[9ico]] [[9icq]], [[9icr]], [[9ics]], [[9ict]], [[9icu]], [[9icv]] - hDpo beta + DNA + nucleotide<br />
+
**[[1bpy]], [[1mq2]], [[1mq3]], [[1zjn]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4do9]], [[4doa]], [[4dob]], [[4doc]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]], [[4z6f]], [[4z6e]], [[4z6d]], [[4z6c]], [[4yn4]], [[4ymo]], [[4ymn]], [[4ymm]], [[4rt3]], [[4rt2]], [[4rq8]], [[4rq7]], [[4rq6]], [[4rq5]], [[4rq4]], [[4rq3]], [[4rq2]], [[4rq1]], [[4rq0]], [[4rpz]], [[4rpy]], [[4rpx]], [[4php]], [[4phe]], [[4ph5]], [[5eoz]], [[5bpc]], [[5bom]], [[5bol]], [[7mz0]], [[7mz1]], [[7mz2]], [[7mz3]], [[7mz4]], [[7mzb]], [[7rbe]], [[7rbf]], [[7rbg]], [[7rbh]], [[7rbi]], [[7rbj]], [[7rbk]], [[7rbl]], [[7rbm]], [[7rbn]], [[7rbo]], [[7s9j]], [[7s9k]], [[7s9l]], [[7s9m]], [[7s9n]], [[7s9o]], [[7a9p]], [[7s9q]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icy]], [[8icz]], [[8vfd]], [[8vfh]], [[9ica]], [[9icb]], [[9icc]], [[9ice]], [[9icf]], [[9icg]], [[9ich]], [[9ici]], [[9icn]], [[9ico]] [[9icq]], [[9icr]], [[9ics]], [[9ict]], [[9icu]], [[9icv]] - hDpo beta + DNA + nucleotide<br />
-
**[[2p66]], [[4f5n]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]],
+
**[[2p66]], [[4f5n]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]], [[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6ph6]], [[6u2o]], [[6u6b]], [[6uok]], [[6uol]], [[6uom]], [[6w2m]], [[7k96]] - hDpo beta + DNA + nucleotide analog<br />
-
[[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6ph6]], [[6u2o]], [[6u6b]], [[6uok]], [[6uol]], [[6uom]], [[6w2m]], [[7k96]] - hDpo beta + DNA + nucleotide analog<br />
+
**[[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]], [[6dic]], [[6btf]], [[6bte]], [[6nkr]], [[6nks]], [[6nkt]], [[6nku]], [[6nkv]], [[6nkw]], [[6nkx]], [[6nky]], [[6nkz]], [[6nl0]], [[6pkz]] - hDpo beta (mutant) + DNA + nucleotide analog<br />
**[[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]], [[6dic]], [[6btf]], [[6bte]], [[6nkr]], [[6nks]], [[6nkt]], [[6nku]], [[6nkv]], [[6nkw]], [[6nkx]], [[6nky]], [[6nkz]], [[6nl0]], [[6pkz]] - hDpo beta (mutant) + DNA + nucleotide analog<br />
**[[3ogu]], [[4jwm]], [[4jwn]], [[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]], [[4r63]], [[4r64]], [[4r65]], [[4r66]] - hDpo beta (mutant) + DNA<br />
**[[3ogu]], [[4jwm]], [[4jwn]], [[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]], [[4r63]], [[4r64]], [[4r65]], [[4r66]] - hDpo beta (mutant) + DNA<br />
Line 280: Line 329:
**[[2v6z]] - hDpo beta N-terminal (mutant)]] - NMR<br />
**[[2v6z]] - hDpo beta N-terminal (mutant)]] - NMR<br />
**[[3k75]], [[3lqc]] - hDpo beta + DNA repair protein XRCC1<br />
**[[3k75]], [[3lqc]] - hDpo beta + DNA repair protein XRCC1<br />
 +
**[[9dwg]], [[9dwh]], [[9dwi]], [[9dwk]], [[9dwm]] - hDpo beta in nucleosome complex – Cryo EM<br />
**[[1rpl]], [[2bpc]], [[1bpe]], [[1bpb]], [[1bpd]], [[3uxn]] - rDpo beta – rat<br />
**[[1rpl]], [[2bpc]], [[1bpe]], [[1bpb]], [[1bpd]], [[3uxn]] - rDpo beta – rat<br />
**[[2van]], [[1jn3]], [[3uxo]], [[3v7l]]- rDpo beta (mutant) <br />
**[[2van]], [[1jn3]], [[3uxo]], [[3v7l]]- rDpo beta (mutant) <br />
Line 293: Line 343:
**[[3b0x]], [[3b0y]] – TtDpo β (mutant) + GTP<br />
**[[3b0x]], [[3b0y]] – TtDpo β (mutant) + GTP<br />
**[[3au6]], [[3auo]] – TtDpo β + GTP + DNA<br />
**[[3au6]], [[3auo]] – TtDpo β + GTP + DNA<br />
-
**[[4p4m]], [[4p4o]], [[4p4p]] - Dpo + DNA + nucleotide – ''Leishmania infantum''<br />
+
**[[4p4m]], [[4p4o]], [[4p4p]] - Dpo beta + DNA + nucleotide – ''Leishmania infantum''<br />
*DNA polymerase beta-like protein
*DNA polymerase beta-like protein
Line 306: Line 356:
**[[3ikm]] - hDpo gamma1+gamma2 <br />
**[[3ikm]] - hDpo gamma1+gamma2 <br />
 +
**[[8v5d]] - hDpo gamma1 – Cryo EM<br />
**[[3ikl]], [[2g4c]] - hDpo gamma2<br />
**[[3ikl]], [[2g4c]] - hDpo gamma2<br />
**[[2jw5]] - hDpo gamma BRCT domain<br />
**[[2jw5]] - hDpo gamma BRCT domain<br />
Line 311: Line 362:
**[[1nzp]] - hDpo gamma lyase domain - NMR<br />
**[[1nzp]] - hDpo gamma lyase domain - NMR<br />
**[[3pmn]], [[3pnc]], [[3mda]], [[2gws]], [[2bcq]], [[2bcr]], [[2bcs]], [[2bcu]], [[2bcv]], [[1xsp]], [[1rzt]] - hDpo gamma + DNA<br />
**[[3pmn]], [[3pnc]], [[3mda]], [[2gws]], [[2bcq]], [[2bcr]], [[2bcs]], [[2bcu]], [[2bcv]], [[1xsp]], [[1rzt]] - hDpo gamma + DNA<br />
 +
**[[8g5i]], [[8g5j]], [[8g5l]], [[8g5m]], [[8g5n]], [[8g5o]], [[8g5s]], [[8t7e]], [[8udl]], [[8v54]], [[8v5r]] - hDpo gamma1,2 + DNA – Cryo EM<br />
 +
**[[8v55]] - hDpo gamma1 (mutant),2 + DNA – Cryo EM<br />
**[[3mgh]], [[3c5f]], [[3c5g]], [[2pfn]] - hDpo gamma (mutant) + DNA<br />
**[[3mgh]], [[3c5f]], [[3c5g]], [[2pfn]] - hDpo gamma (mutant) + DNA<br />
-
**[[3pml]], [[3mdc]], [[1xsn]] - hDpo gamma + DNA + nucleotide<br />
+
**[[8g5p]] - hDpo gamma1,2 + DNA + RNA – Cryo EM<br />
 +
**[[3pml]], [[3mdc]], [[1xsn]], [[8udk]] - hDpo gamma + DNA + nucleotide<br />
**[[5c53]], [[5c52]], [[5c51]] - hDpo gamma1 + DNA + nucleotide + pyrimidine derivative<br />
**[[5c53]], [[5c52]], [[5c51]] - hDpo gamma1 + DNA + nucleotide + pyrimidine derivative<br />
-
**[[4ztz]], [[4ztu]] - hDpo gamma1, gamma2 + DNA + nucleotide <br />
+
**[[4ztz]], [[4ztu]] - hDpo gamma1,2 + DNA + nucleotide <br />
 +
**[[8d33]], [[8d37]], [[8d3r]], [[8d42]], [[9ggf]] - hDpo gamma1,2 + DNA + nucleotide – Cryo EM<br />
 +
**[[9ggb]], [[9ggc]], [[9ggd]], [[9gge]] - hDpo gamma1,2 (mutant) + DNA + nucleotide – Cryo EM<br />
**[[4k4g]], [[4k4h]], [[4k4i]] - hDpo gamma + DNA + nucleotide analog<br />
**[[4k4g]], [[4k4h]], [[4k4i]] - hDpo gamma + DNA + nucleotide analog<br />
**[[3mgi]], [[3hw8]], [[3hwt]], [[3hx0]], [[2pfo]], [[2pfp]], [[2pfq]] - hDpo gamma (mutant) + DNA + nucleotide<br />
**[[3mgi]], [[3hw8]], [[3hwt]], [[3hx0]], [[2pfo]], [[2pfp]], [[2pfq]] - hDpo gamma (mutant) + DNA + nucleotide<br />
 +
**[[8f69]] - mDpo gamma2 + DNA - mouse<br />
*DNA polymerase delta
*DNA polymerase delta
Line 323: Line 380:
**[[3upq]], [[3uq0]], [[3uq2]] - hDpo δ (mutant) + DNA<br />
**[[3upq]], [[3uq0]], [[3uq2]] - hDpo δ (mutant) + DNA<br />
**[[4fo6]] - hDpo δ (mutant) + DNA + nucleotide analog<br />
**[[4fo6]] - hDpo δ (mutant) + DNA + nucleotide analog<br />
 +
**[[9ekb]] - hDpo δ subunits catalytic+2+3+4 – Cryo EM<br />
**[[6s1m]], [[6s1n]], [[6s1o]], [[6tny]] - hDpo δ subunits catalytic+2+3+4 + PCNA + DNA + nucleotide analog – Cryo EM<br />
**[[6s1m]], [[6s1n]], [[6s1o]], [[6tny]] - hDpo δ subunits catalytic+2+3+4 + PCNA + DNA + nucleotide analog – Cryo EM<br />
**[[6tnz]] - hDpo δ subunits catalytic+2+3+4 + PCNA + FLAP endonuclease +DNA + nucleotide analog – Cryo EM<br />
**[[6tnz]] - hDpo δ subunits catalytic+2+3+4 + PCNA + FLAP endonuclease +DNA + nucleotide analog – Cryo EM<br />
Line 329: Line 387:
*DNA polymerase epsilon
*DNA polymerase epsilon
-
**[[5vbn]] - hDpo epsilon subunits A+2 <br />
+
**[[5vbn]] - hDpo epsilon + subunits A+2 <br />
 +
**[[9f6i]], [[9f6j]], [[9f6l]] - hDpo epsilon subunit A + DNA – Cryo EM <br />
 +
**[[9b8s]], [[9f6e]], [[9f6f]] - hDpo epsilon subunit A + DNA + PCNA – Cryo EM <br />
 +
**[[9b8t]] - hDpo epsilon subunit A + DNA + PCNA + nucleotide – Cryo EM <br />
*DNA polymerase zeta
*DNA polymerase zeta
Line 339: Line 400:
**[[4fjo]], [[4gk5]] - hDpo kappa + hDpo zeta catalytic subunit + DNA repair protein Rev1 + MAD2B<br />
**[[4fjo]], [[4gk5]] - hDpo kappa + hDpo zeta catalytic subunit + DNA repair protein Rev1 + MAD2B<br />
**[[6v8p]] - hDpo zeta catalytic subunit + hDpo d subunits 3+small – Cryo EM<br />
**[[6v8p]] - hDpo zeta catalytic subunit + hDpo d subunits 3+small – Cryo EM<br />
-
**[[6v93]] - hDpo zeta catalytic+processivity subunits + hDpo d subunits 3+small + DNA + dCTP – Cryo EM<br />
+
**[[6v93]] - hDpo zeta catalytic+processivity subunits + hDpo delta subunits 3+small + DNA + dCTP – Cryo EM<br />
-
*DNA polymerase eta
+
*DNA polymerase eta or DNA polymerase theta; domains: helicase 1-894; polymerase 1819-2590
**[[2i5o]] - hDpo eta ubiquitin-binding zinc finger – NMR<br />
**[[2i5o]] - hDpo eta ubiquitin-binding zinc finger – NMR<br />
**[[3wup]] - hDpo eta ubiquitin-binding zinc finger <br />
**[[3wup]] - hDpo eta ubiquitin-binding zinc finger <br />
-
**[[3tq1]], [[4j9k]], [[4j9l]], [[4j9m]], [[4j9n]], [[4j9o]], [[4j9p]], [[4j9q]], [[4j9r]], [[4j9s]], [[6mp3]] - hDpo eta + DNA <br />
+
**[[5a9j]] – hDpo helicase domain <br />
-
**[[3jaa]], [[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[3si8]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[5l9x]], [[5l1l]], [[5l1k]], [[5l1j]], [[5l1i]], [[5kg7]], [[5kg6]], [[5kg5]], [[5kg4]], [[5kg3]], [[5kg2]], [[5kg1]], [[5kg0]], [[5kfz]], [[5kfy]], [[5kfx]], [[5kfw]], [[5kfv]], [[5kfu]], [[5kft]], [[5kfs]], [[5kfr]], [[5kfq]], [[5kfp]], [[5kfo]], [[5kfn]], [[5kfm]], [[5kfl]], [[5kfk]], [[5kfj]], [[5kfi]], [[5kfh]], [[5kfg]], [[5kff]], [[5kfe]], [[5kfd]], [[5kfc]], [[5kfb]], [[5kfa]], [[5jum]], [[5f9n]], [[5f9l]], [[5ewg]], [[5ewf]], [[5ewe]], [[5dqi]], [[5dqh]], [[5dqg]], [[5dlg]], [[5dlf]], [[5dgb]], [[5dga]], [[5dg9]], [[5dg8]], [[5dg7]], [[4yr3]], [[4yr2]], [[4yr0]], [[4yqw]], [[4yp3]], [[4ru9]], [[6mxo]], [[6m7v]], [[6m7u]], [[6m7t]], [[6m7p]], [[6m7o]], [[6d0z]], [[6d0m]], [[6mq8]], [[6pl7]], [[6pl8]], [[6plc]], [[6ui2]], [[6uqi]], [[6v5k]], [[6w5x]], [[6wk6]], [[7l69]], [[7lcd]], [[7m7l]], [[7m7m]], [[7m7n]], [[7m7o]], [[7m7p]], [[7m7q]], [[7m7r]], [[7m7s]], [[7m7t]], [[7m7u]], [[7m7y]], [[7m7z]], [[7m80]], [[7m81]], [[7m82]], [[7m83]], [[7m84]], [[7m85]], [[7m86]], [[7m87]], [[7m88]], [[7m89]], [[7m8a]], [[7m8b]], [[7m8c]], [[7m8d]], [[7u72]], [[7u73]], [[7u74]], [[7u75]], [[7u76]], [[7u77]], [[7u78]], [[7u79]], [[7u7a]], [[7u7b]], [[7u7c]], [[7u7d]], [[7u7e]], [[7u7g]], [[7u7f]], [[7u7i]], [[7u7j]], [[7u7k]], [[7u7l]], [[7u7r]], [[7u7s]], [[7u7t]], [[7u7u]], [[7u7v]], [[7u7w]], [[7u7x]], [[7u7y]], [[7u7z]], [[7u80]], [[7u81]], [[7u82]], [[7u83]], [[7u84]], [[8e85]], [[8e86]], [[8e87]], [[8e88]], [[8e89]], [[8e8a]], [[8e8c]], [[8e8d]], [[8e8e]], [[8e8f]], [[8e8g]], [[8e8h]], [[8e8j]], [[8e8k]] - hDpo eta + DNA + nucleotide<br />
+
**[[9asj]], [[9ask]], [[9asl]], [[9bh6]], [[9bh7]] - hDpo eta - Cryo EM <br />
 +
**[[9bp9]], [[9bpa]] - hDpo eta + inhibitor - Cryo EM <br />
 +
**[[8ski]], [[8w0a]], [[9bh8]], [[9bh9]], [[9bha]], [[9c5q]] - hDpo eta helicase domain + DNA - Cryo EM <br />
 +
**[[3tq1]], [[4j9k]], [[4j9l]], [[4j9m]], [[4j9n]], [[4j9o]], [[4j9p]], [[4j9q]], [[4j9r]], [[4j9s]], [[6mp3]], [[8eve]], [[8evf]] - hDpo eta + DNA <br />
 +
**[[3jaa]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[3si8]], [[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[4x0p]], [[4x0q]], [[5l9x]], [[5l1l]], [[5l1k]], [[5l1j]], [[5l1i]], [[5kg7]], [[5kg6]], [[5kg5]], [[5kg4]], [[5kg3]], [[5kg2]], [[5kg1]], [[5kg0]], [[5kfz]], [[5kfy]], [[5kfx]], [[5kfw]], [[5kfv]], [[5kfu]], [[5kft]], [[5kfs]], [[5kfr]], [[5kfq]], [[5kfp]], [[5kfo]], [[5kfn]], [[5kfm]], [[5kfl]], [[5kfk]], [[5kfj]], [[5kfi]], [[5kfh]], [[5kfg]], [[5kff]], [[5kfe]], [[5kfd]], [[5kfc]], [[5kfb]], [[5kfa]], [[5jum]], [[5f9n]], [[5f9l]], [[5ewg]], [[5ewf]], [[5ewe]], [[5dqi]], [[5dqh]], [[5dqg]], [[5dlg]], [[5dlf]], [[5dgb]], [[5dga]], [[5dg9]], [[5dg8]], [[5dg7]], [[4yr3]], [[4yr2]], [[4yr0]], [[4yqw]], [[4yp3]], [[4ru9]], [[6mxo]], [[6m7v]], [[6m7u]], [[6m7t]], [[6m7p]], [[6m7o]], [[6d0z]], [[6d0m]], [[6mq8]], [[6pl7]], [[6pl8]], [[6plc]], [[6ui2]], [[6uqi]], [[6v5k]], [[6w5x]], [[6wk6]], [[7l69]], [[7lcd]], [[7m7l]], [[7m7m]], [[7m7n]], [[7m7o]], [[7m7p]], [[7m7q]], [[7m7r]], [[7m7s]], [[7m7t]], [[7m7u]], [[7m7y]], [[7m7z]], [[7m80]], [[7m81]], [[7m82]], [[7m83]], [[7m84]], [[7m85]], [[7m86]], [[7m87]], [[7m88]], [[7m89]], [[7m8a]], [[7m8b]], [[7m8c]], [[7m8d]], [[7u72]], [[7u73]], [[7u74]], [[7u75]], [[7u76]], [[7u77]], [[7u78]], [[7u79]], [[7u7a]], [[7u7b]], [[7u7c]], [[7u7d]], [[7u7e]], [[7u7g]], [[7u7f]], [[7u7i]], [[7u7j]], [[7u7k]], [[7u7l]], [[7u7r]], [[7u7s]], [[7u7t]], [[7u7u]], [[7u7v]], [[7u7w]], [[7u7x]], [[7u7y]], [[7u7z]], [[7u80]], [[7u81]], [[7u82]], [[7u83]], [[7u84]], [[8e85]], [[8e86]], [[8e87]], [[8e88]], [[8e89]], [[8e8a]], [[8e8c]], [[8e8d]], [[8e8e]], [[8e8f]], [[8e8g]], [[8e8h]], [[8e8j]], [[8e8k]], [[8fn3]], [[8fog]], [[8foh]], [[8foj]], [[8g8h]], [[8g8j]], [[8gbf]], [[8gkr]], [[8gml]], [[8ujt]], [[8ujv]], [[8ujx]], [[8uk4]], [[8v7a]], [[8v7b]], [[8v7c]], [[8v7d]], [[8v7e]], [[8v7f]], [[8v7g]], [[8v7h]], [[8v7j]], [[8v7k]], [[8v7i]], [[9chw]], [[9ci9]], [[9cih]], [[9ciq]] - hDpo eta + DNA + nucleotide<br />
 +
**[[9au5]], [[9au8]], [[9au9]] - hDpo eta + DNA + nucleotide – Cryo EM<br />
**[[6pz3]], [[6q02]] - hDpo eta (mutant) + DNA + nucleotide<br />
**[[6pz3]], [[6q02]] - hDpo eta (mutant) + DNA + nucleotide<br />
-
**[[5aga]] - hDpo eta + nucleotide<br />
+
**[[6xbu]], [[7zus]] – hDpo eta polymerase domain + nucleotide + DNA<br />
 +
**[[5a9f]], [[5aga]] - hDpo eta + nucleotide<br />
 +
**[[7zx0]], [[7zx1]], [[8e23]], [[8e24]] , [[8gd7]]– hDpo polymerase domain + inhibitor + DNA<br />
 +
**[[8ef9]], [[8efc]], [[8efk]] – Dpo eta polymerase domain + nucleotide + DNA – Lates calcarifer<br />
*DNA polymerase iota
*DNA polymerase iota
-
**[[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]], [[4eyh]], [[4eyi]], [[3g6v]], [[3g6x]], [[3g6y]], [[5ulx]], [[5ulw]], [[5kt7]], [[5kt6]], [[5kt5]], [[5kt4]], [[5kt3]], [[5kt2]] - hDpo iota + DNA + nucleotide<br />
+
**[[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]], [[4eyh]], [[4eyi]], [[3g6v]], [[3g6x]], [[3g6y]], [[5ulx]], [[5ulw]], [[5kt7]], [[5kt6]], [[5kt5]], [[5kt4]], [[5kt3]], [[5kt2]] - hDpo iota + DNA + nucleotide<br />
-
**[[3ngd]], [[3osn]], [[3h40]] - hDpo iota catalytic fragment + DNA <br />
+
**[[3ngd]], [[3osn]], [[3h40]] - hDpo iota catalytic fragment + DNA <br />
**[[2ktf]] - hDpo iota + ubiquitin<br />
**[[2ktf]] - hDpo iota + ubiquitin<br />
**[[2l0f]], [[2l0g]] - hDpo iota + ubiquitin – NMR<br />
**[[2l0f]], [[2l0g]] - hDpo iota + ubiquitin – NMR<br />
**[[2khu]] - hDpo iota ubiquitin binding motif – NMR<br />
**[[2khu]] - hDpo iota ubiquitin binding motif – NMR<br />
-
**[[2khw]] - hDpoiota ubiquitin binding motif + ubiquitin – NMR<br />
+
**[[2khw]] - hDpo iota ubiquitin binding motif + ubiquitin – NMR<br />
**[[2kwu]], [[2kwv]] - mDpo iota C-terminal + ubiquitin - NMR<br />
**[[2kwu]], [[2kwv]] - mDpo iota C-terminal + ubiquitin - NMR<br />
**[[3ai4]] - mDpo iota/yEGFP<br />
**[[3ai4]] - mDpo iota/yEGFP<br />
Line 365: Line 434:
**[[1t94]] - hDpo kappa<br />
**[[1t94]] - hDpo kappa<br />
**[[3in5]], [[5w2c]], [[5w2a]], [[5t14]] - hDpo kappa + DNA<br />
**[[3in5]], [[5w2c]], [[5w2a]], [[5t14]] - hDpo kappa + DNA<br />
-
**[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]], [[4u6p]], [[6cst]], [[6bs1]], [[6brx]], [[5w2a]], [[5w2c]] - hDpo kappa + DNA + nucleotide<br />
+
**[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]], [[4u6p]], [[6cst]], [[6bs1]], [[6brx]], [[5w2a]], [[5w2c]] - hDpo kappa + DNA + nucleotide<br />
-
**[[7nv0]], [[7nv1]] - hDpo kappa + PCNA + DNA + nucleotide<br />
+
**[[7nv0]], [[7nv1]] - hDpo kappa + PCNA + DNA + nucleotide<br />
-
**[[4u7c]], [[4y6p]] - hDpo kappa + DNA + benzopyrene derivative<br />
+
**[[4u7c]], [[4y6p]] - hDpo kappa + DNA + benzopyrene derivative<br />
**[[2lsi]] - hDpo kappa peptide + hRev1<br />
**[[2lsi]] - hDpo kappa peptide + hRev1<br />
-
**[[2lsk]] - mDpo kappa + DNA repair protein Rev1<br />
+
**[[2lsk]] - mDpo lappa + DNA repair protein Rev1<br />
*DNA polymerase lambda
*DNA polymerase lambda
Line 375: Line 444:
**[[5cb1]] – hDpo <br />
**[[5cb1]] – hDpo <br />
**[[5iio]], [[5iin]], [[5iim]], [[5iil]], [[5iik]], [[5iij]], [[5iii]], [[5ddm]] – hDpo + DNA<br />
**[[5iio]], [[5iin]], [[5iim]], [[5iil]], [[5iik]], [[5iij]], [[5iii]], [[5ddm]] – hDpo + DNA<br />
-
**[[5cp2]] – hDpo (mutant) + DNA<br />
+
**[[5cp2]], [[8u0o]] – hDpo (mutant) + DNA<br />
**[[5dkw]], [[5ca7]], [[4xus]], [[4xrh]], [[4xq8]], [[4xa5]], [[4x5v]], [[7m07]], [[7m08]], [[7m09]], [[7m0a]], [[7m0b]], [[7m0c]], [[7m0d]], [[7m0e]] – hDpo + DNA + nucleotide<br />
**[[5dkw]], [[5ca7]], [[4xus]], [[4xrh]], [[4xq8]], [[4xa5]], [[4x5v]], [[7m07]], [[7m08]], [[7m09]], [[7m0a]], [[7m0b]], [[7m0c]], [[7m0d]], [[7m0e]] – hDpo + DNA + nucleotide<br />
-
**[[5cwr]], [[5cr0]], [[5cj7]], [[5chg]], [[7m43]], [[7m44]], [[7m45]], [[7m46]], [[7m47]], [[7m48]], [[7m49]], [[7m4a]], [[7m4b]], [[7m4c]], [[7m4d]], [[7m4e]], [[7m4f]], [[7m4h]], [[7m4i]], [[7m4j]], [[7m4k]], [[7m4l]] – hDpo (mutant) + DNA + nucleotide<br />
+
**[[5cwr]], [[5cr0]], [[5cj7]], [[5chg]], [[7m43]], [[7m44]], [[7m45]], [[7m46]], [[7m47]], [[7m48]], [[7m49]], [[7m4a]], [[7m4b]], [[7m4c]], [[7m4d]], [[7m4e]], [[7m4f]], [[7m4h]], [[7m4i]], [[7m4j]], [[7m4k]], [[7m4l]], [[8u0p]] – hDpo (mutant) + DNA + nucleotide<br />
**[[5ddy]] – hDpo + nucleotide<br />
**[[5ddy]] – hDpo + nucleotide<br />
Line 390: Line 459:
**[[6vez]], [[6vf0]], [[6vf1]], [[6vf2]], [[6vf3]], [[6vf4]], [[6vf5]], [[6vf6]], [[6vf7]], [[6vf8]], [[6vf9]], [[6vfa]], [[6vfb]], [[6vfc]], [[7co6]], [[7co8]], [[7co9]], [[7coa]], [[7cob]], [[7cod]], [[7kss]], [[7kst]], [[7ksu]], [[7ksv]], [[7ksw]], [[7ksx]], [[7ksy]], [[7ksz]], [[7kt0]], [[7kt1]], [[7kt2]], [[7kt3]], [[7kt4]], [[7kt5]], [[7kt6]], [[7kt7]], [[7kt9]], [[7kta]], [[7ktb]], [[7ktc]], [[7ktd]], [[7kte]], [[7ktf]], [[7ktg]], [[7kth]], [[7kti]], [[7ktj]], [[7ktk]], [[7ktl]], [[7ktm]], [[7ktn]] - hDpo mu + DNA + nucleotide derivative<br />
**[[6vez]], [[6vf0]], [[6vf1]], [[6vf2]], [[6vf3]], [[6vf4]], [[6vf5]], [[6vf6]], [[6vf7]], [[6vf8]], [[6vf9]], [[6vfa]], [[6vfb]], [[6vfc]], [[7co6]], [[7co8]], [[7co9]], [[7coa]], [[7cob]], [[7cod]], [[7kss]], [[7kst]], [[7ksu]], [[7ksv]], [[7ksw]], [[7ksx]], [[7ksy]], [[7ksz]], [[7kt0]], [[7kt1]], [[7kt2]], [[7kt3]], [[7kt4]], [[7kt5]], [[7kt6]], [[7kt7]], [[7kt9]], [[7kta]], [[7ktb]], [[7ktc]], [[7ktd]], [[7kte]], [[7ktf]], [[7ktg]], [[7kth]], [[7kti]], [[7ktj]], [[7ktk]], [[7ktl]], [[7ktm]], [[7ktn]] - hDpo mu + DNA + nucleotide derivative<br />
**[[4m04]], [[4m0a]], [[4yd1]], [[6ipg]], [[6ipf]], [[6ipe]], [[6ipd]], [[5vz7]], [[5vz8]], [[5vz9]], [[5vza]], [[5vzb]], [[5vzc]], [[5vzd]], [[5vze]], [[5vzf]], [[5vzg]], [[5vzh]], [[5vzi]], [[6ak8]], [[6ak9]], [[6akh]], [[6p1m]], [[6p1n]], [[6p1o]], [[6p1p]], [[6p1q]], [[6p1r]], [[6p1s]], [[6p1t]], [[6p1u]], [[6p1v]], [[6p1w]], [[7coc]] - hDpo mu residues 132-494+411-494 (mutant) + DNA + nucleotide derivative<br />
**[[4m04]], [[4m0a]], [[4yd1]], [[6ipg]], [[6ipf]], [[6ipe]], [[6ipd]], [[5vz7]], [[5vz8]], [[5vz9]], [[5vza]], [[5vzb]], [[5vzc]], [[5vzd]], [[5vze]], [[5vzf]], [[5vzg]], [[5vzh]], [[5vzi]], [[6ak8]], [[6ak9]], [[6akh]], [[6p1m]], [[6p1n]], [[6p1o]], [[6p1p]], [[6p1q]], [[6p1r]], [[6p1s]], [[6p1t]], [[6p1u]], [[6p1v]], [[6p1w]], [[7coc]] - hDpo mu residues 132-494+411-494 (mutant) + DNA + nucleotide derivative<br />
-
**[[2ihm]] - mDpo mu catalytic domain + DNA – mouse<br />
+
**[[2ihm]] - mDpo malpha catalytic domain + DNA <br />
*DNA polymerase nu
*DNA polymerase nu
Line 401: Line 470:
**[[2m2u]], [[2m2v]] – AsfvDpo X + nucleotide – NMR<br />
**[[2m2u]], [[2m2v]] – AsfvDpo X + nucleotide – NMR<br />
**[[2m2w]] – AsfvDpo X + nucleotide + DNA – NMR<br />
**[[2m2w]] – AsfvDpo X + nucleotide + DNA – NMR<br />
-
**[[5xma]], [[5xm9]], [[5xm8]] – AsfvDpo X + DNA<br />
+
**[[5xma]], [[5xm9]], [[5xm8]], [[8e9a]] – AsfvDpo X + DNA<br />
-
**[[2w9m]] – DrDpo X
+
**[[8ild]], [[8ile]], [[8ilf]], [[8ilg]], [[8ilh]], [[8ili]] – AsfvDpo X + DNA + nucleotide – Cryo EM<br />
-
 
+
**[[2w9m]] – DrDpo X
-
*DNA polymerase theta
+
-
 
+
-
**[[5a9j]] – hDpo helicase domain 1-894<br />
+
-
**[[5a9f]], [[5aga]] – hDpo helicase domain + nucleotide<br />
+
-
**[[4x0p]], [[4x0q]] – hDpo helicase domain + nucleotide + DNA<br />
+
-
**[[6xbu]], [[7zus]] – hDpo polymerase domain 1819-2590 + nucleotide + DNA<br />
+
-
**[[7zx0]], [[7zx1]], [[8e23]], [[8e24]] – hDpo polymerase domain + inhibitor + DNA<br />
+
-
**[[8ef9]], [[8efc]], [[8efk]] – Dpo polymerase domain + nucleotide + DNA – Lates calcarifer<br />
+
*DNA polymerase from yeast
*DNA polymerase from yeast
Line 417: Line 478:
**[[3oiq]] - yDpo alpha + cell division control protein 13 <br />
**[[3oiq]] - yDpo alpha + cell division control protein 13 <br />
**[[3flo]], [[3lgb]] - yDpo alpha subunits A,B<br />
**[[3flo]], [[3lgb]] - yDpo alpha subunits A,B<br />
 +
**[[8foc]], [[8fod]], [[8foe]] - yDpo alpha subunits A,B + primase small+large subunits – Cryo EM<br />
 +
**[[8fok]] - yDpo alpha subunits A,B + primase small+large subunits + DNA – Cryo EM<br />
**[[4b08]], [[4fvm]] - yDpo alpha subunit A<br />
**[[4b08]], [[4fvm]] - yDpo alpha subunit A<br />
**[[4fxd]], [[4fyd]] - yDpo alpha subunit A + RNA + DNA<br />
**[[4fxd]], [[4fyd]] - yDpo alpha subunit A + RNA + DNA<br />
**[[5oki]] - yDpo alpha subunit A + DCC1 + chromosome fidelity protein<br />
**[[5oki]] - yDpo alpha subunit A + DCC1 + chromosome fidelity protein<br />
 +
**[[9c51]], [[9c52]], [[9c53]] – yDpo gamma catalytic+small+3 subunits + DNA + nucleotide – Cryo EM<br />
 +
**[[9d2i]] – yDpo gamma catalytic subunit + DNA + nucleotide – Cryo EM<br />
**[[3iay]] - yDpo delta catalytic subunit + DNA<br />
**[[3iay]] - yDpo delta catalytic subunit + DNA<br />
**[[6p1h]] - yDpo delta catalytic+small+3 subunits + DNA + nucleotide – Cryo EM<br />
**[[6p1h]] - yDpo delta catalytic+small+3 subunits + DNA + nucleotide – Cryo EM<br />
-
**[[6wjv]] - yDpo II epsilon – Cryo EM<br />
+
**[[6wjv]] - yDpo II epsilon – Cryo EM<br />
-
**[[6hv8]] - yDpo II epsilon subunit A+B – Cryo EM<br />
+
**[[6hv8]] - yDpo II epsilon subunit A+B – Cryo EM<br />
 +
**[[8xgc]] - yDpo II epsilon in replication origin complex – Cryo EM<br />
**[[3oha]], [[3ohb]], [[3mfh]] - yDpo epsilon (mutant) + DNA<br />
**[[3oha]], [[3ohb]], [[3mfh]] - yDpo epsilon (mutant) + DNA<br />
-
**[[6i8a]], [[6qib]], [[7r3x]], [[7r3y]] - yDpo II epsilon subunit A + DNA + nucleotide <br />
+
**[[6i8a]], [[6qib]], [[7r3x]], [[7r3y]] - yDpo II epsilon subunit A + DNA + nucleotide <br />
**[[6g0a]], [[6fwk]], [[3mfi]], [[4m8o]] - yDpo II epsilon subunit A (mutant) + DNA + nucleotide derivative<br />
**[[6g0a]], [[6fwk]], [[3mfi]], [[4m8o]] - yDpo II epsilon subunit A (mutant) + DNA + nucleotide derivative<br />
**[[6s1c]], [[6s2e]], [[6s2f]] - yDpo II epsilon subunit A (mutant) + DCC1 + chromosome transmission fidelity proteins<br />
**[[6s1c]], [[6s2e]], [[6s2f]] - yDpo II epsilon subunit A (mutant) + DCC1 + chromosome transmission fidelity proteins<br />
-
**[[6hv9]] - yDpo II epsilon subunit A+B + CMG + DNA + nucleotide – Cryo EM<br />
+
**[[6hv9]] - yDpo II epsilon subunit A+B + CMG + DNA + nucleotide – Cryo EM<br />
-
**[[2r8j]], [[2r8k]], [[4ptf]] - yDpo epsilon catalytic domain + DNA + nucleotide <br />
+
**[[2r8j]], [[2r8k]], [[4ptf]] - yDpo epsilon catalytic domain + DNA + nucleotide <br />
-
**[[6h1v]] - yDpo epsilon catalytic domain (mutant) + DNA + nucleotide <br />
+
**[[6h1v]], [[8b67]], [[8b6k]], [[8b77]], [[8b79]] - yDpo epsilon catalytic domain (mutant) + DNA + nucleotide <br />
**[[2xgp]], [[2xgq]], [[2wtf]] - yDpo epsilon + DNA<br />
**[[2xgp]], [[2xgq]], [[2wtf]] - yDpo epsilon + DNA<br />
-
**[[7lxd]] - yDpo eta catalytic+processivity subunits + hDpo d subunits 3+small – Cryo EM<br />
+
**[[9b8r]] - yDpo epsilon + DNA – Cryo EM<br />
-
**[[7s0t]] - yDpo eta catalytic+processivity subunits + hDpo d subunits 3+small + DNA – Cryo EM<br />
+
**[[7lxd]] - yDpo zeta catalytic+processivity subunits + hDpo delta subunits 3+small – Cryo EM<br />
 +
**[[7s0t]] - yDpo zeta catalytic+processivity subunits + hDpo delta subunits 3+small + DNA – Cryo EM<br />
 +
**[[8tlq]] - yDpo zeta catalytic+processivity subunits + hDpo delta subunit 3 + DNA + dCTP – Cryo EM<br />
**[[5y27]], [[5y26]] - Dpo epsilon subunit D + transcription factor – fission yeast<br />
**[[5y27]], [[5y26]] - Dpo epsilon subunit D + transcription factor – fission yeast<br />
-
**[[1jih]], [[5vtp]] – yDpo catalytic domain<br />
+
**[[1jih]], [[5vtp]] – yDpo nu catalytic domain<br />
-
 
+
**[[8b9b]], [[8kg6]], [[8kg8]], [[8kg9]], [[8w7m]], [[8w7s]] - yDpo III in replisome complex Cryo EM<br />
-
*DNA polymerase Rev1; Domains – BRCT 44-133; catalytic 330-833; UBM2 998-1040; C-terminal 1158-1251
+
-
 
+
-
**[[3gqc]] – hRev1 catalytic domain + DNA + nucleotide<br />
+
-
**[[2ebw]] – hRev1 BRCT domain – NMR<br />
+
-
**[[6axd]] – hRev1 UBM2 domain – NMR<br />
+
-
**[[6asr]] – hRev1 UBM2 domain + ubiquitin<br />
+
-
**[[5vzm]] – hRev1 UBM2 domain + ubiquitin - NMR<br />
+
-
**[[2lsg]], [[2lsy]] – hRev1 C-terminal domain – NMR<br />
+
-
**[[2n1g]] – hRev1 C-terminal domain + Dpo d subunit 3 – NMR<br />
+
-
**[[2lsi]] – hRev1 C-terminal domain + hDpo kappa peptide <br />
+
-
**[[2lsk]] – hRev1 C-terminal domain + hDpo kappa peptide <br />
+
-
**[[4ext]] – hRev1 C-terminal domain + hDpo eta catalytic subunit peptide + MAD2B<br />
+
-
**[[4gk5]] – hRev1 C-terminal domain + hDpo kappa peptide + hDpo eta catalytic subunit peptide + MAD2B<br />
+
-
**[[2lsj]] – mRev1 C-terminal domain + mDpo kappa peptide <br />
+
-
**[[4fjo]] – mRev1 C-terminal domain + mDpo kappa peptide + MAD2B<br />
+
-
**[[4id3]], [[5umv]] – yRev1 BRCT domain <br />
+
-
**[[2m2i]], [[5vx7]] – yRev1 BRCT domain – NMR<br />
+
-
**[[6x70]], [[6x72]], [[6x73]], [[6x74]], [[6x76]] – yRev1 catalytic domain + DNA <br />
+
-
**[[3bjy]], [[2aq4]], [[3osp]], [[5wm1]], [[5wm8]], [[5wmb]], [[6x6z]], [[6x71]], [[6x75]], [[6x77]] – yRev1 catalytic domain + DNA + nucleotide<br />
+
-
*Terminal deoxynucleotidyl transferase
+
* Terminal deoxynucleotidyl transferase
**[[2coe]] – TdT BRCT domain – NMR<br />
**[[2coe]] – TdT BRCT domain – NMR<br />

Current revision

3D Structures of DNA polymerase

Updated on 30-April-2025

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

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