DNA polymerase 3D structures
From Proteopedia
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**[[6ap4]] - Dpo III beta subunit – ''Acinetobacter baumannii''<br /> | **[[6ap4]] - Dpo III beta subunit – ''Acinetobacter baumannii''<br /> | ||
**[[6amq]] - Dpo III beta subunit – ''Enterobacter cloacae''<br /> | **[[6amq]] - Dpo III beta subunit – ''Enterobacter cloacae''<br /> | ||
| - | ** | + | **[[5wce]], [[6izo]], [[6jir]] - Dpo III beta subunit – ''Caulobacter crescentus''<br /> |
**[[5w7z]] - RcDpo III beta subunit – ''Rickettsia conorii''<br /> | **[[5w7z]] - RcDpo III beta subunit – ''Rickettsia conorii''<br /> | ||
**[[6man]] - Dpo III beta subunit – ''Rickettsia bellii''<br /> | **[[6man]] - Dpo III beta subunit – ''Rickettsia bellii''<br /> | ||
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**[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br /> | **[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br /> | ||
**[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br /> | **[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br /> | ||
| - | **[[1ig9]], [[1q9x]], [[1q9y]], [[2dy4]], [[2ozs]], [[2p5g]], [[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45 | + | **[[1ig9]], [[1q9x]], [[1q9y]], [[2dy4]], [[2ozs]], [[2p5g]], [[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]] - EpDpo (mutant) + DNA + nucleotide<br /> |
**[[1clq]], [[3iuq]], [[7f4y]] - EpDpo + DNA + nucleotide<br /> | **[[1clq]], [[3iuq]], [[7f4y]] - EpDpo + DNA + nucleotide<br /> | ||
**[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br /> | **[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br /> | ||
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**[[4ppx]] - hDpo beta + spiroiminohydantoin + DNA<br /> | **[[4ppx]] - hDpo beta + spiroiminohydantoin + DNA<br /> | ||
| - | **[[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[1zqe]], [[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo | + | **[[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[1zqe]], [[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4klq]], [[4kls]], [[4klt]], [[4klu]], [[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[4pgy]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]], [[5wo0]], [[5wnz]], [[5wny]], [[5wnx]], [[5vs4]], [[5vs3]], [[5vs2]], [[5vs1]], [[5vs0]], [[5vrz]], [[5vry]], [[5vrx]], [[5vrw]], [[5vez]], [[5v1r]], [[5v1p]], [[5v1o]], [[5v1n]], [[5v1j]], [[5v1i]], [[5v1h]], [[5v1g]], [[5v1f]], [[5ugp]], [[5ugo]], [[5ugn]], [[5u9h]], [[5u8i]], [[5u8h]], [[5u8g]], [[5u2t]], [[5u2s]], [[5u2r]], [[5tzv]], [[5tbc]], [[5tbb]], [[5tba]], [[5tb9]], [[5tb8]], [[5j2k]], [[5j2j]], [[5j2i]], [[5j2h]], [[5j2g]], [[5j2f]], [[5j2e]], [[5j2d]], [[5j2c]], [[5j2b]], [[5j2a]], [[5j29]], [[5j0y]], [[5j0x]], [[5j0w]], [[5j0u]], [[5j0t]], [[5j0s]], [[5j0r]], [[5j0q]], [[5j0p]], [[5j0o]], [[5dbc]], [[5dbb]], [[5dba]], [[5db9]], [[5db8]], [[5db7]], [[5db6]], [[6g2q]], [[6ph5]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icg]], [[7ich]], [[7icj]], [[7ick]], [[7icm]], [[7icn]], [[7ico]], [[7icp]], [[7icq]], [[7icr]], [[7ics]], [[7ict]], [[7icu]], [[7icv]], [[7k97]], [[8icb]], [[8icc]], [[8vf8]], [[8vf9]], [[8vfa]], [[8vfb]], [[8vfc]], [[8vfe]], [[8vff]], [[9vfg]], [[8vfi]], [[8vfj]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]] - hDpo beta + DNA<br /> |
**[[1bpy]], [[1mq2]], [[1mq3]], [[1zjn]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4do9]], [[4doa]], [[4dob]], [[4doc]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]], [[4z6f]], [[4z6e]], [[4z6d]], [[4z6c]], [[4yn4]], [[4ymo]], [[4ymn]], [[4ymm]], [[4rt3]], [[4rt2]], [[4rq8]], [[4rq7]], [[4rq6]], [[4rq5]], [[4rq4]], [[4rq3]], [[4rq2]], [[4rq1]], [[4rq0]], [[4rpz]], [[4rpy]], [[4rpx]], [[4php]], [[4phe]], [[4ph5]], [[5eoz]], [[5bpc]], [[5bom]], [[5bol]], [[7mz0]], [[7mz1]], [[7mz2]], [[7mz3]], [[7mz4]], [[7mzb]], [[7rbe]], [[7rbf]], [[7rbg]], [[7rbh]], [[7rbi]], [[7rbj]], [[7rbk]], [[7rbl]], [[7rbm]], [[7rbn]], [[7rbo]], [[7s9j]], [[7s9k]], [[7s9l]], [[7s9m]], [[7s9n]], [[7s9o]], [[7a9p]], [[7s9q]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icy]], [[8icz]], [[8vfd]], [[8vfh]], [[9ica]], [[9icb]], [[9icc]], [[9ice]], [[9icf]], [[9icg]], [[9ich]], [[9ici]], [[9icn]], [[9ico]] [[9icq]], [[9icr]], [[9ics]], [[9ict]], [[9icu]], [[9icv]] - hDpo beta + DNA + nucleotide<br /> | **[[1bpy]], [[1mq2]], [[1mq3]], [[1zjn]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4do9]], [[4doa]], [[4dob]], [[4doc]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]], [[4z6f]], [[4z6e]], [[4z6d]], [[4z6c]], [[4yn4]], [[4ymo]], [[4ymn]], [[4ymm]], [[4rt3]], [[4rt2]], [[4rq8]], [[4rq7]], [[4rq6]], [[4rq5]], [[4rq4]], [[4rq3]], [[4rq2]], [[4rq1]], [[4rq0]], [[4rpz]], [[4rpy]], [[4rpx]], [[4php]], [[4phe]], [[4ph5]], [[5eoz]], [[5bpc]], [[5bom]], [[5bol]], [[7mz0]], [[7mz1]], [[7mz2]], [[7mz3]], [[7mz4]], [[7mzb]], [[7rbe]], [[7rbf]], [[7rbg]], [[7rbh]], [[7rbi]], [[7rbj]], [[7rbk]], [[7rbl]], [[7rbm]], [[7rbn]], [[7rbo]], [[7s9j]], [[7s9k]], [[7s9l]], [[7s9m]], [[7s9n]], [[7s9o]], [[7a9p]], [[7s9q]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icy]], [[8icz]], [[8vfd]], [[8vfh]], [[9ica]], [[9icb]], [[9icc]], [[9ice]], [[9icf]], [[9icg]], [[9ich]], [[9ici]], [[9icn]], [[9ico]] [[9icq]], [[9icr]], [[9ics]], [[9ict]], [[9icu]], [[9icv]] - hDpo beta + DNA + nucleotide<br /> | ||
| - | **[[2p66]], [[4f5n]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]], | + | **[[2p66]], [[4f5n]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]], [[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6ph6]], [[6u2o]], [[6u6b]], [[6uok]], [[6uol]], [[6uom]], [[6w2m]], [[7k96]] - hDpo beta + DNA + nucleotide analog<br /> |
| - | [[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6ph6]], [[6u2o]], [[6u6b]], [[6uok]], [[6uol]], [[6uom]], [[6w2m]], [[7k96]] - hDpo beta + DNA + nucleotide analog<br /> | + | |
**[[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]], [[6dic]], [[6btf]], [[6bte]], [[6nkr]], [[6nks]], [[6nkt]], [[6nku]], [[6nkv]], [[6nkw]], [[6nkx]], [[6nky]], [[6nkz]], [[6nl0]], [[6pkz]] - hDpo beta (mutant) + DNA + nucleotide analog<br /> | **[[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]], [[6dic]], [[6btf]], [[6bte]], [[6nkr]], [[6nks]], [[6nkt]], [[6nku]], [[6nkv]], [[6nkw]], [[6nkx]], [[6nky]], [[6nkz]], [[6nl0]], [[6pkz]] - hDpo beta (mutant) + DNA + nucleotide analog<br /> | ||
**[[3ogu]], [[4jwm]], [[4jwn]], [[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]], [[4r63]], [[4r64]], [[4r65]], [[4r66]] - hDpo beta (mutant) + DNA<br /> | **[[3ogu]], [[4jwm]], [[4jwn]], [[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]], [[4r63]], [[4r64]], [[4r65]], [[4r66]] - hDpo beta (mutant) + DNA<br /> | ||
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**[[4fo6]] - hDpo δ (mutant) + DNA + nucleotide analog<br /> | **[[4fo6]] - hDpo δ (mutant) + DNA + nucleotide analog<br /> | ||
**[[9ekb]] - hDpo δ subunits catalytic+2+3+4 – Cryo EM<br /> | **[[9ekb]] - hDpo δ subunits catalytic+2+3+4 – Cryo EM<br /> | ||
| - | **[[6s1m]], [[6s1n]], [[6s1o]], [[6tny]] - hDpo δ subunits | + | **[[6s1m]], [[6s1n]], [[6s1o]], [[6tny]] - hDpo δ subunits catalytic+2+3+4 + PCNA + DNA + nucleotide analog – Cryo EM<br /> |
| - | catalytic+2+3+4 + PCNA + DNA + nucleotide analog – Cryo EM<br /> | + | |
| - | + | ||
**[[6tnz]] - hDpo δ subunits catalytic+2+3+4 + PCNA + FLAP endonuclease +DNA + nucleotide analog – Cryo EM<br /> | **[[6tnz]] - hDpo δ subunits catalytic+2+3+4 + PCNA + FLAP endonuclease +DNA + nucleotide analog – Cryo EM<br /> | ||
**[[7kc0]] - hDpo δ + PCNA + POL31 + POL32 +DNA + nucleotide analog – Cryo EM<br /> | **[[7kc0]] - hDpo δ + PCNA + POL31 + POL32 +DNA + nucleotide analog – Cryo EM<br /> | ||
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*DNA polymerase iota | *DNA polymerase iota | ||
| - | **[[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]], [[4eyh]], [[4eyi]], [[3g6v]], [[3g6x]], [[3g6y]], [[5ulx]], [[5ulw]], [[5kt7]], [[5kt6]], [[5kt5]], [[5kt4]], [[5kt3]], [[5kt2]] - hDpo | + | **[[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]], [[4eyh]], [[4eyi]], [[3g6v]], [[3g6x]], [[3g6y]], [[5ulx]], [[5ulw]], [[5kt7]], [[5kt6]], [[5kt5]], [[5kt4]], [[5kt3]], [[5kt2]] - hDpo iota + DNA + nucleotide<br /> |
| - | **[[3ngd]], [[3osn]], [[3h40]] - hDpo | + | **[[3ngd]], [[3osn]], [[3h40]] - hDpo iota catalytic fragment + DNA <br /> |
| - | **[[2ktf]] - hDpo | + | **[[2ktf]] - hDpo iota + ubiquitin<br /> |
| - | **[[2l0f]], [[2l0g]] - | + | **[[2l0f]], [[2l0g]] - hDpo iota + ubiquitin – NMR<br /> |
| - | **[[2khu]] - | + | **[[2khu]] - hDpo iota ubiquitin binding motif – NMR<br /> |
| - | **[[2khw]] - | + | **[[2khw]] - hDpo iota ubiquitin binding motif + ubiquitin – NMR<br /> |
| - | **[[2kwu]], [[2kwv]] - mDpo | + | **[[2kwu]], [[2kwv]] - mDpo iota C-terminal + ubiquitin - NMR<br /> |
| - | **[[3ai4]] - mDpo | + | **[[3ai4]] - mDpo iota/yEGFP<br /> |
*DNA polymerase kappa | *DNA polymerase kappa | ||
| - | **[[1t94]] - hDpo | + | **[[1t94]] - hDpo kappa<br /> |
| - | **[[3in5]], [[5w2c]], [[5w2a]], [[5t14]] - hDpo | + | **[[3in5]], [[5w2c]], [[5w2a]], [[5t14]] - hDpo kappa + DNA<br /> |
| - | **[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]], [[4u6p]], [[6cst]], [[6bs1]], [[6brx]], [[5w2a]], [[5w2c]] - hDpo | + | **[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]], [[4u6p]], [[6cst]], [[6bs1]], [[6brx]], [[5w2a]], [[5w2c]] - hDpo kappa + DNA + nucleotide<br /> |
| - | **[[7nv0]], [[7nv1]] - hDpo | + | **[[7nv0]], [[7nv1]] - hDpo kappa + PCNA + DNA + nucleotide<br /> |
| - | **[[4u7c]], [[4y6p]] - hDpo | + | **[[4u7c]], [[4y6p]] - hDpo kappa + DNA + benzopyrene derivative<br /> |
| - | **[[2lsi]] - hDpo | + | **[[2lsi]] - hDpo kappa peptide + hRev1<br /> |
| - | **[[2lsk]] - mDpo | + | **[[2lsk]] - mDpo lappa + DNA repair protein Rev1<br /> |
*DNA polymerase lambda | *DNA polymerase lambda | ||
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*DNA polymerase mu or DNA-directed DNA/RNA polymerase | *DNA polymerase mu or DNA-directed DNA/RNA polymerase | ||
| - | **[[2htf]], [[2dun]] - hDpo | + | **[[2htf]], [[2dun]] - hDpo mu BRCT domain residues 24-143 – NMR<br /> |
| - | **[[4lzd]] - hDpo | + | **[[4lzd]] - hDpo mu residues 132-494 <br /> |
| - | **[[4lzg]], [[5tyz]], [[5tyy]], [[5tyx]], [[5tyw]], [[5tyv]], [[5tyu]], [[5tyg]], [[5tyf]], [[5tye]], [[5tyd]], [[5tyc]], [[5tyb]], [[5txz]], [[5txx]], [[5tws]], [[5twr]], [[5twq]], [[5twp]], [[5zlc]] - hDpo | + | **[[4lzg]], [[5tyz]], [[5tyy]], [[5tyx]], [[5tyw]], [[5tyv]], [[5tyu]], [[5tyg]], [[5tyf]], [[5tye]], [[5tyd]], [[5tyc]], [[5tyb]], [[5txz]], [[5txx]], [[5tws]], [[5twr]], [[5twq]], [[5twp]], [[5zlc]] - hDpo mu residues 132-494 + DNA <br /> |
| - | **[[4yd2]], [[4ycx]] - hDpo | + | **[[4yd2]], [[4ycx]] - hDpo mu residues 132-494 (mutant) + DNA <br /> |
| - | **[[6ak5]] - hDpo | + | **[[6ak5]] - hDpo mu residues 132-397+411-494 + nucleotide derivative<br /> |
| - | **[[6ipn]], [[6ipm]], [[6ipl]], [[6ipk]], [[6ipj]], [[6ipi]], [[6iph]], [[6aec]], [[6aeh]], [[6ak6]] - hDpo | + | **[[6ipn]], [[6ipm]], [[6ipl]], [[6ipk]], [[6ipj]], [[6ipi]], [[6iph]], [[6aec]], [[6aeh]], [[6ak6]] - hDpo mu residues 132-397+411-494 (mutant) + nucleotide derivative<br /> |
| - | **[[6vez]], [[6vf0]], [[6vf1]], [[6vf2]], [[6vf3]], [[6vf4]], [[6vf5]], [[6vf6]], [[6vf7]], [[6vf8]], [[6vf9]], [[6vfa]], [[6vfb]], [[6vfc]], [[7co6]], [[7co8]], [[7co9]], [[7coa]], [[7cob]], [[7cod]], [[7kss]], [[7kst]], [[7ksu]], [[7ksv]], [[7ksw]], [[7ksx]], [[7ksy]], [[7ksz]], [[7kt0]], [[7kt1]], [[7kt2]], [[7kt3]], [[7kt4]], [[7kt5]], [[7kt6]], [[7kt7]], [[7kt9]], [[7kta]], [[7ktb]], [[7ktc]], [[7ktd]], [[7kte]], [[7ktf]], [[7ktg]], [[7kth]], [[7kti]], [[7ktj]], [[7ktk]], [[7ktl]], [[7ktm]], [[7ktn]] - hDpo | + | **[[6vez]], [[6vf0]], [[6vf1]], [[6vf2]], [[6vf3]], [[6vf4]], [[6vf5]], [[6vf6]], [[6vf7]], [[6vf8]], [[6vf9]], [[6vfa]], [[6vfb]], [[6vfc]], [[7co6]], [[7co8]], [[7co9]], [[7coa]], [[7cob]], [[7cod]], [[7kss]], [[7kst]], [[7ksu]], [[7ksv]], [[7ksw]], [[7ksx]], [[7ksy]], [[7ksz]], [[7kt0]], [[7kt1]], [[7kt2]], [[7kt3]], [[7kt4]], [[7kt5]], [[7kt6]], [[7kt7]], [[7kt9]], [[7kta]], [[7ktb]], [[7ktc]], [[7ktd]], [[7kte]], [[7ktf]], [[7ktg]], [[7kth]], [[7kti]], [[7ktj]], [[7ktk]], [[7ktl]], [[7ktm]], [[7ktn]] - hDpo mu + DNA + nucleotide derivative<br /> |
| - | **[[4m04]], [[4m0a]], [[4yd1]], [[6ipg]], [[6ipf]], [[6ipe]], [[6ipd]], [[5vz7]], [[5vz8]], [[5vz9]], [[5vza]], [[5vzb]], [[5vzc]], [[5vzd]], [[5vze]], [[5vzf]], [[5vzg]], [[5vzh]], [[5vzi]], [[6ak8]], [[6ak9]], [[6akh]], [[6p1m]], [[6p1n]], [[6p1o]], [[6p1p]], [[6p1q]], [[6p1r]], [[6p1s]], [[6p1t]], [[6p1u]], [[6p1v]], [[6p1w]], [[7coc]] - hDpo | + | **[[4m04]], [[4m0a]], [[4yd1]], [[6ipg]], [[6ipf]], [[6ipe]], [[6ipd]], [[5vz7]], [[5vz8]], [[5vz9]], [[5vza]], [[5vzb]], [[5vzc]], [[5vzd]], [[5vze]], [[5vzf]], [[5vzg]], [[5vzh]], [[5vzi]], [[6ak8]], [[6ak9]], [[6akh]], [[6p1m]], [[6p1n]], [[6p1o]], [[6p1p]], [[6p1q]], [[6p1r]], [[6p1s]], [[6p1t]], [[6p1u]], [[6p1v]], [[6p1w]], [[7coc]] - hDpo mu residues 132-494+411-494 (mutant) + DNA + nucleotide derivative<br /> |
| - | **[[2ihm]] - mDpo | + | **[[2ihm]] - mDpo malpha catalytic domain + DNA <br /> |
*DNA polymerase nu | *DNA polymerase nu | ||
| Line 479: | Line 476: | ||
*DNA polymerase from yeast | *DNA polymerase from yeast | ||
| - | **[[3oiq]] - yDpo | + | **[[3oiq]] - yDpo alpha + cell division control protein 13 <br /> |
| - | **[[3flo]], [[3lgb]] - yDpo | + | **[[3flo]], [[3lgb]] - yDpo alpha subunits A,B<br /> |
| - | **[[8foc]], [[8fod]], [[8foe]] - yDpo | + | **[[8foc]], [[8fod]], [[8foe]] - yDpo alpha subunits A,B + primase small+large subunits – Cryo EM<br /> |
| - | **[[8fok]] - yDpo | + | **[[8fok]] - yDpo alpha subunits A,B + primase small+large subunits + DNA – Cryo EM<br /> |
| - | **[[4b08]], [[4fvm]] - yDpo | + | **[[4b08]], [[4fvm]] - yDpo alpha subunit A<br /> |
| - | **[[4fxd]], [[4fyd]] - yDpo | + | **[[4fxd]], [[4fyd]] - yDpo alpha subunit A + RNA + DNA<br /> |
| - | **[[5oki]] - yDpo | + | **[[5oki]] - yDpo alpha subunit A + DCC1 + chromosome fidelity protein<br /> |
**[[9c51]], [[9c52]], [[9c53]] – yDpo gamma catalytic+small+3 subunits + DNA + nucleotide – Cryo EM<br /> | **[[9c51]], [[9c52]], [[9c53]] – yDpo gamma catalytic+small+3 subunits + DNA + nucleotide – Cryo EM<br /> | ||
**[[9d2i]] – yDpo gamma catalytic subunit + DNA + nucleotide – Cryo EM<br /> | **[[9d2i]] – yDpo gamma catalytic subunit + DNA + nucleotide – Cryo EM<br /> | ||
| - | **[[3iay]] - yDpo | + | **[[3iay]] - yDpo delta catalytic subunit + DNA<br /> |
| - | **[[6p1h]] - yDpo | + | **[[6p1h]] - yDpo delta catalytic+small+3 subunits + DNA + nucleotide – Cryo EM<br /> |
| - | **[[6wjv]] - yDpo II | + | **[[6wjv]] - yDpo II epsilon – Cryo EM<br /> |
| - | **[[6hv8]] - yDpo II | + | **[[6hv8]] - yDpo II epsilon subunit A+B – Cryo EM<br /> |
| - | **[[8xgc]] - yDpo II | + | **[[8xgc]] - yDpo II epsilon in replication origin complex – Cryo EM<br /> |
| - | **[[3oha]], [[3ohb]], [[3mfh]] - yDpo | + | **[[3oha]], [[3ohb]], [[3mfh]] - yDpo epsilon (mutant) + DNA<br /> |
| - | **[[6i8a]], [[6qib]], [[7r3x]], [[7r3y]] - yDpo II | + | **[[6i8a]], [[6qib]], [[7r3x]], [[7r3y]] - yDpo II epsilon subunit A + DNA + nucleotide <br /> |
| - | **[[6g0a]], [[6fwk]], [[3mfi]], [[4m8o]] - yDpo II | + | **[[6g0a]], [[6fwk]], [[3mfi]], [[4m8o]] - yDpo II epsilon subunit A (mutant) + DNA + nucleotide derivative<br /> |
| - | **[[6s1c]], [[6s2e]], [[6s2f]] - yDpo II | + | **[[6s1c]], [[6s2e]], [[6s2f]] - yDpo II epsilon subunit A (mutant) + DCC1 + chromosome transmission fidelity proteins<br /> |
| - | **[[6hv9]] - yDpo II | + | **[[6hv9]] - yDpo II epsilon subunit A+B + CMG + DNA + nucleotide – Cryo EM<br /> |
| - | **[[2r8j]], [[2r8k]], [[4ptf]] - yDpo | + | **[[2r8j]], [[2r8k]], [[4ptf]] - yDpo epsilon catalytic domain + DNA + nucleotide <br /> |
| - | **[[6h1v]], [[8b67]], [[8b6k]], [[8b77]], [[8b79]] - yDpo | + | **[[6h1v]], [[8b67]], [[8b6k]], [[8b77]], [[8b79]] - yDpo epsilon catalytic domain (mutant) + DNA + nucleotide <br /> |
| - | **[[2xgp]], [[2xgq]], [[2wtf]] - yDpo | + | **[[2xgp]], [[2xgq]], [[2wtf]] - yDpo epsilon + DNA<br /> |
| - | **[[9b8r]] - yDpo | + | **[[9b8r]] - yDpo epsilon + DNA – Cryo EM<br /> |
| - | **[[7lxd]] - yDpo | + | **[[7lxd]] - yDpo zeta catalytic+processivity subunits + hDpo delta subunits 3+small – Cryo EM<br /> |
| - | **[[7s0t]] - yDpo | + | **[[7s0t]] - yDpo zeta catalytic+processivity subunits + hDpo delta subunits 3+small + DNA – Cryo EM<br /> |
| - | **[[8tlq]] - yDpo | + | **[[8tlq]] - yDpo zeta catalytic+processivity subunits + hDpo delta subunit 3 + DNA + dCTP – Cryo EM<br /> |
| - | **[[5y27]], [[5y26]] - Dpo | + | **[[5y27]], [[5y26]] - Dpo epsilon subunit D + transcription factor – fission yeast<br /> |
| - | **[[1jih]], [[5vtp]] – yDpo | + | **[[1jih]], [[5vtp]] – yDpo nu catalytic domain<br /> |
**[[8b9b]], [[8kg6]], [[8kg8]], [[8kg9]], [[8w7m]], [[8w7s]] - yDpo III in replisome complex – Cryo EM<br /> | **[[8b9b]], [[8kg6]], [[8kg8]], [[8kg9]], [[8w7m]], [[8w7s]] - yDpo III in replisome complex – Cryo EM<br /> | ||
| Line 514: | Line 511: | ||
**[[1jms]] – mTdT catalytic domain + Mg <br / > | **[[1jms]] – mTdT catalytic domain + Mg <br / > | ||
| - | Terminal deoxynucleotidyl transferase binary complex | + | *Terminal deoxynucleotidyl transferase binary complex |
**[[4iqt]], [[4iqu]], [[4iqv]], [[4iqw]] – mTdT catalytic domain + inhibitor <br / > | **[[4iqt]], [[4iqu]], [[4iqv]], [[4iqw]] – mTdT catalytic domain + inhibitor <br / > | ||
Current revision
3D Structures of DNA polymerase
Updated on 30-April-2025
