JMS/Sandbox/msn2 1

From Proteopedia

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(New page: ==Your Heading Here (maybe something like 'Structure')== <StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''> This is a default text for you...)
Current revision (20:18, 19 May 2025) (edit) (undo)
 
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==Your Heading Here (maybe something like 'Structure')==
==Your Heading Here (maybe something like 'Structure')==
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<StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''>
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<StructureSection size='340' side='right' caption='Caption for this structure' scene='10/1080617/Msn2/1'>
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This is a default text for your page '''JMS/Sandbox/msn2 1'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
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You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
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== Function ==
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<jmol><jmolButton><script>select all; spacefill on; cartoon off;</script><text>Show Surface Representation</text></jmolButton></jmol>
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== Disease ==
 
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== Relevance ==
 
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== Structural highlights ==
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<jmol><jmolButton><script>select all; cartoon; color chain; wireframe off; spacefill off; labels off; set ambientPercent 85; set diffusePercent 85;</script><text>Show Overall Structure</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color chain; spin on; wireframe off; spacefill off;</script><text>Rotate Structure</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; spin off; cartoon; color chain; select 647-665; color red; wireframe off; spacefill off; zoom 400; center selected;</script><text>Zoom to Zinc Finger 1 (647-665)</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color chain; select 676-698; color blue; wireframe off; spacefill off; zoom 400; center selected;</script><text>Zoom to Zinc Finger 2 (676-698)</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color chain; select 237-327; color green; wireframe off; spacefill off; zoom 200; center selected;</script><text>Highlight NES Region (237-327)</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color chain; select 576-648; color magenta; wireframe off; spacefill off; zoom 200; center selected;</script><text>Highlight NLS Region (576-648)</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color chain; wireframe off; select protein; trace only; select 288,304; spacefill 120; color yellow; center selected; zoom 300;</script><text>Show NES Phosphorylation Sites</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color chain; wireframe off; select protein; trace only; select 582,620,625,633; spacefill 120; color yellow; center selected; zoom 300;</script><text>Show NLS Phosphorylation Sites</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color chain; select 647-698; color purple; wireframe off; spacefill off; select ZN; spacefill 120; color cpk; zoom 350; center selected;</script><text>DNA Binding Domain with Zinc</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; set cartoonFancy true; cartoon; color structure; select helix; color red; select sheet; color yellow; select turn; color green; select ZN; spacefill; color cpk; zoom 150;</script><text>Show Secondary Structure</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color chain; wireframe off; spacefill off; labels off; spin off; zoom 100; center all;</script><text>Reset View</text></jmolButton></jmol>
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This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
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<jmol>
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<jmolButton>
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<script>
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select 640-704; cartoon; color bfactor;
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spacefill 0.5; color cpk;
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</script>
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<text>Putative Zn-Coordinating Cys/His</text>
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</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
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<script>
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select 570-650; cartoon; color magenta;
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select 582,620,625,633; spacefill off;
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select 576-648 and (lys or arg); spacefill 0.7; color blue;
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</script>
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<text>Basic Residues in NLS</text>
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</jmolButton>
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</jmol>
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incorporate
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https://proteopedia.org/wiki/index.php/User:Jaime_Prilusky/JSmolExtension/Tags_for_In-page_Models
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https://chemapps.stolaf.edu/jmol/docs/
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<jmol><jmolButton><script>select all; cartoon; color structure; spacefill off; labels off;</script><text>Show Overall Structure</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color structure; select 647-665; color red;</script><text>Highlight Zinc Finger 1 (647-665)</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color structure; select 676-698; color blue;</script><text>Highlight Zinc Finger 2 (676-698)</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color structure; select 237-327; color green;</script><text>Highlight NES Region (237-327)</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color structure; select 576-648; color magenta;</script><text>Highlight NLS Region (576-648)</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color structure; spacefill off; select 288,304; spacefill; color yellow;</script><text>Highlight NES Phosphorylation Sites (S288, S304)</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color structure; spacefill off; select 582,620,625,633; spacefill; color yellow;</script><text>Highlight NLS Phosphorylation Sites (S582, S620, S625, S633)</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color structure; spacefill off; select 686; spacefill; color yellow;</script><text>Highlight DBD-proximal Phosphorylation Site (S686)</text></jmolButton></jmol>
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<jmol><jmolButton><script>select all; cartoon; color structure; spacefill off; labels off;</script><text>Reset View</text></jmolButton></jmol>
</StructureSection>
</StructureSection>
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== References ==
 
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<references/>
 

Current revision

Your Heading Here (maybe something like 'Structure')

Caption for this structure

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

Joseph M. Steinberger

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