JMS/Sandbox/msn2 1
From Proteopedia
(Difference between revisions)
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| + | ==Your Heading Here (maybe something like 'Structure')== | ||
<StructureSection size='340' side='right' caption='Caption for this structure' scene='10/1080617/Msn2/1'> | <StructureSection size='340' side='right' caption='Caption for this structure' scene='10/1080617/Msn2/1'> | ||
| - | < | + | <jmol><jmolButton><script>select all; spacefill on; cartoon off;</script><text>Show Surface Representation</text></jmolButton></jmol> |
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| + | <jmol><jmolButton><script>select all; cartoon; color chain; wireframe off; spacefill off; labels off; set ambientPercent 85; set diffusePercent 85;</script><text>Show Overall Structure</text></jmolButton></jmol> | ||
| + | <jmol><jmolButton><script>select all; cartoon; color chain; spin on; wireframe off; spacefill off;</script><text>Rotate Structure</text></jmolButton></jmol> | ||
| + | <jmol><jmolButton><script>select all; spin off; cartoon; color chain; select 647-665; color red; wireframe off; spacefill off; zoom 400; center selected;</script><text>Zoom to Zinc Finger 1 (647-665)</text></jmolButton></jmol> | ||
| + | <jmol><jmolButton><script>select all; cartoon; color chain; select 676-698; color blue; wireframe off; spacefill off; zoom 400; center selected;</script><text>Zoom to Zinc Finger 2 (676-698)</text></jmolButton></jmol> | ||
| + | <jmol><jmolButton><script>select all; cartoon; color chain; select 237-327; color green; wireframe off; spacefill off; zoom 200; center selected;</script><text>Highlight NES Region (237-327)</text></jmolButton></jmol> | ||
| + | <jmol><jmolButton><script>select all; cartoon; color chain; select 576-648; color magenta; wireframe off; spacefill off; zoom 200; center selected;</script><text>Highlight NLS Region (576-648)</text></jmolButton></jmol> | ||
| + | <jmol><jmolButton><script>select all; cartoon; color chain; wireframe off; select protein; trace only; select 288,304; spacefill 120; color yellow; center selected; zoom 300;</script><text>Show NES Phosphorylation Sites</text></jmolButton></jmol> | ||
| + | <jmol><jmolButton><script>select all; cartoon; color chain; wireframe off; select protein; trace only; select 582,620,625,633; spacefill 120; color yellow; center selected; zoom 300;</script><text>Show NLS Phosphorylation Sites</text></jmolButton></jmol> | ||
| + | <jmol><jmolButton><script>select all; cartoon; color chain; select 647-698; color purple; wireframe off; spacefill off; select ZN; spacefill 120; color cpk; zoom 350; center selected;</script><text>DNA Binding Domain with Zinc</text></jmolButton></jmol> | ||
| + | <jmol><jmolButton><script>select all; set cartoonFancy true; cartoon; color structure; select helix; color red; select sheet; color yellow; select turn; color green; select ZN; spacefill; color cpk; zoom 150;</script><text>Show Secondary Structure</text></jmolButton></jmol> | ||
| + | <jmol><jmolButton><script>select all; cartoon; color chain; wireframe off; spacefill off; labels off; spin off; zoom 100; center all;</script><text>Reset View</text></jmolButton></jmol> | ||
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| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script> | ||
| + | select 640-704; cartoon; color bfactor; | ||
| + | spacefill 0.5; color cpk; | ||
| + | </script> | ||
| + | <text>Putative Zn-Coordinating Cys/His</text> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
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| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script> | ||
| + | select 570-650; cartoon; color magenta; | ||
| + | select 582,620,625,633; spacefill off; | ||
| + | select 576-648 and (lys or arg); spacefill 0.7; color blue; | ||
| + | </script> | ||
| + | <text>Basic Residues in NLS</text> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
incorporate | incorporate | ||
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https://chemapps.stolaf.edu/jmol/docs/ | https://chemapps.stolaf.edu/jmol/docs/ | ||
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| - | </StructureSection> | ||
<jmol><jmolButton><script>select all; cartoon; color structure; spacefill off; labels off;</script><text>Show Overall Structure</text></jmolButton></jmol> | <jmol><jmolButton><script>select all; cartoon; color structure; spacefill off; labels off;</script><text>Show Overall Structure</text></jmolButton></jmol> | ||
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| + | <jmol><jmolButton><script>select all; cartoon; color structure; select 647-665; color red;</script><text>Highlight Zinc Finger 1 (647-665)</text></jmolButton></jmol> | ||
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| + | <jmol><jmolButton><script>select all; cartoon; color structure; select 676-698; color blue;</script><text>Highlight Zinc Finger 2 (676-698)</text></jmolButton></jmol> | ||
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| + | <jmol><jmolButton><script>select all; cartoon; color structure; select 237-327; color green;</script><text>Highlight NES Region (237-327)</text></jmolButton></jmol> | ||
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| + | <jmol><jmolButton><script>select all; cartoon; color structure; select 576-648; color magenta;</script><text>Highlight NLS Region (576-648)</text></jmolButton></jmol> | ||
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| + | <jmol><jmolButton><script>select all; cartoon; color structure; spacefill off; select 288,304; spacefill; color yellow;</script><text>Highlight NES Phosphorylation Sites (S288, S304)</text></jmolButton></jmol> | ||
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| + | <jmol><jmolButton><script>select all; cartoon; color structure; spacefill off; select 582,620,625,633; spacefill; color yellow;</script><text>Highlight NLS Phosphorylation Sites (S582, S620, S625, S633)</text></jmolButton></jmol> | ||
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| + | <jmol><jmolButton><script>select all; cartoon; color structure; spacefill off; select 686; spacefill; color yellow;</script><text>Highlight DBD-proximal Phosphorylation Site (S686)</text></jmolButton></jmol> | ||
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| + | <jmol><jmolButton><script>select all; cartoon; color structure; spacefill off; labels off;</script><text>Reset View</text></jmolButton></jmol> | ||
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| + | </StructureSection> | ||
Current revision
Your Heading Here (maybe something like 'Structure')
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