1w5z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:54, 30 July 2025) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1w5z.png|left|200px]]
 
-
{{STRUCTURE_1w5z| PDB=1w5z | SCENE= }}
+
==AGAO covalent complex with Benzylhydrazine==
 +
<StructureSection load='1w5z' size='340' side='right'caption='[[1w5z]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1w5z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W5Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W5Z FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3TY:3-[(3E)-3-(BENZYLHYDRAZONO)-4-HYDROXY-6-OXOCYCLOHEXA-1,4-DIEN-1-YL]-L-ALANINE'>3TY</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w5z OCA], [https://pdbe.org/1w5z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w5z RCSB], [https://www.ebi.ac.uk/pdbsum/1w5z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w5z ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PAOX_ARTGO PAOX_ARTGO]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w5/1w5z_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1w5z ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Complexes of Arthrobacter globiformis amine oxidase (AGAO) with the inhibitors benzylhydrazine and tranylcypromine (an antidepressant drug) have been refined at 1.86 and 1.65 A resolution, respectively. Both inhibitors form covalent adducts with the TPQ cofactor. A tyrosine residue, proposed to act as a gate to the AGAO active site, is in its open conformation.
-
===AGAO COVALENT COMPLEX WITH BENZYLHYDRAZINE===
+
Complexes of the copper-containing amine oxidase from Arthrobacter globiformis with the inhibitors benzylhydrazine and tranylcypromine.,Langley DB, Trambaiolo DM, Duff AP, Dooley DM, Freeman HC, Guss JM Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Jul 1;64(Pt, 7):577-83. Epub 2008 Jun 11. PMID:18607080<ref>PMID:18607080</ref>
-
{{ABSTRACT_PUBMED_18607080}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 1w5z" style="background-color:#fffaf0;"></div>
-
[[1w5z]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W5Z OCA].
+
==See Also==
==See Also==
-
*[[Copper Amine Oxidase|Copper Amine Oxidase]]
+
*[[Copper amine oxidase 3D structures|Copper amine oxidase 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:018607080</ref><references group="xtra"/>
+
__TOC__
 +
</StructureSection>
[[Category: Arthrobacter globiformis]]
[[Category: Arthrobacter globiformis]]
-
[[Category: Oxidoreductase]]
+
[[Category: Large Structures]]
-
[[Category: Dooley, D M.]]
+
[[Category: Dooley DM]]
-
[[Category: Duff, A P.]]
+
[[Category: Duff AP]]
-
[[Category: Freeman, H C.]]
+
[[Category: Freeman HC]]
-
[[Category: Guss, J M.]]
+
[[Category: Guss JM]]
-
[[Category: Juda, G A.]]
+
[[Category: Juda GA]]
-
[[Category: Langley, D B.]]
+
[[Category: Langley DB]]
-
[[Category: Shepard, E M.]]
+
[[Category: Shepard EM]]
-
[[Category: Trambaiolo, D M.]]
+
[[Category: Trambaiolo DM]]
-
[[Category: 3ty]]
+
-
[[Category: Amine oxidase]]
+
-
[[Category: Arthrobacter globiformi]]
+
-
[[Category: Benzylhydrazine]]
+
-
[[Category: Bh]]
+
-
[[Category: Copper containing]]
+
-
[[Category: Inhibited]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Quinone]]
+
-
[[Category: Tpq]]
+

Current revision

AGAO covalent complex with Benzylhydrazine

PDB ID 1w5z

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools