We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

Main Page

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
<table id="tableColumnsMainPage" style="width:100%; border:2px solid #ddd; border-collapse:collapse; table-layout:fixed;">
+
<table id="tableColumnsMainPage" style="width:100%;border:2px solid #ddd;border-collapse: collapse;table-layout: fixed; ">
-
<tr>
+
<tr><td colspan='3' style="background:#F5F5FC;border:1px solid #ddd;">
-
<td colspan="3" style="background:#F5F5FC; border:1px solid #ddd;">
+
-
<!-- FIXED: ISSN block is right-aligned, no float -->
+
<!-- NEW WRAPPER to contain the float -->
-
<div style="text-align:right; font-size:1.2em; padding:5px 10px;">
+
<div style="overflow:auto;">
-
<b><i>ISSN 2310-6301</i></b>
+
-
</div>
+
-
<span style="display:block; margin:0; padding:0.3em; color:#000; font-style:italic; font-size:1.4em;">
+
<div style="top:+0.2em; font-size:1.2em; padding:5px 5px 5px 10px; float:right;">'''''ISSN 2310-6301'''''</div>
-
<b>As life is more than 2D</b>, Proteopedia helps to bridge the gap between 3D structure &amp; function of biomacromolecules
+
-
</span>
+
-
<span style="display:block; margin:0; padding:0.3em; color:#000; font-style:italic; font-size:1.1em; max-width:80%;">
+
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.4em;">
-
<b>Proteopedia</b> presents this information in a user-friendly way as a '''collaborative &amp; free 3D-encyclopedia of proteins &amp; other biomolecules.'''
+
<b>As life is more than 2D</b>, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules
-
</span>
+
</span>
-
</td>
+
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.1em;max-width:80%;display:block;">
-
</tr>
+
<b>Proteopedia</b> presents this information in a user-friendly way as a '''collaborative & free 3D-encyclopedia of proteins & other biomolecules.'''
 +
</span>
 +
 
 +
</div><!-- /overflow:auto wrapper -->
 +
 
 +
</td></tr>
<tr>
<tr>
-
<th style="padding:10px; background-color:#33ff7b;">Selected Research Pages</th>
+
<th style="padding: 10px;background-color: #33ff7b">Selected Research Pages</th>
-
<th style="padding:10px; background-color:#f1b840;">In Journals</th>
+
<th style="padding: 10px;background-color: #f1b840">In Journals</th>
-
<th style="padding:10px; background-color:#79baff;">Education</th>
+
<th style="padding: 10px;background-color: #79baff">Education</th>
</tr>
</tr>
-
<tr valign="top">
+
<tr valign='top'>
-
<td style="padding:5px;">{{Proteopedia:Featured SEL/{{#expr: {{#time:U}} mod {{Proteopedia:Number of SEL articles}}}}}}</td>
+
<td style="padding: 5px;"> {{Proteopedia:Featured SEL/{{#expr: {{#time:U}} mod {{Proteopedia:Number of SEL articles}}}}}}</td>
-
<td style="padding:5px;">{{Proteopedia:Featured JRN/{{#expr: {{#time:U}} mod {{Proteopedia:Number of JRN articles}}}}}}</td>
+
<td style="padding: 5px;"> {{Proteopedia:Featured JRN/{{#expr: {{#time:U}} mod {{Proteopedia:Number of JRN articles}}}}}}</td>
-
<td style="padding:5px;">{{Proteopedia:Featured EDU/{{#expr: {{#time:U}} mod {{Proteopedia:Number of EDU articles}}}}}}</td>
+
<td style="padding: 5px;"> {{Proteopedia:Featured EDU/{{#expr: {{#time:U}} mod {{Proteopedia:Number of EDU articles}}}}}}</td>
</tr>
</tr>
-
<tr style="font-size:1.2em; text-align:center;">
+
<tr style="font-size: 1.2em; text-align: center;">
-
<td style="padding:10px; background-color:#33ff7b;"></td>
+
<td style="padding: 10px;background-color: #33ff7b"></td>
-
<td style="padding:10px; background-color:#f1b840;"></td>
+
<td style="padding: 10px;background-color: #f1b840"></td>
-
<td style="padding:10px; background-color:#79baff;"></td>
+
<td style="padding: 10px;background-color: #79baff"></td>
</tr>
</tr>
-
<tr style="font-size:1.0em; text-align:center;">
+
<tr style="font-size: 1.0em; text-align: center;">
-
<td style="padding:10px;">
+
-
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
+
-
<p>[[Proteopedia:Video_Guide|Video Guides]]</p>
+
-
<p>[[Who knows]] ...</p>
+
-
</td>
+
-
<td style="padding:10px;">
+
<td style="padding: 10px;>
-
<p>[[I3DC|About Interactive 3D Complements - '''I3DCs''']]</p>
+
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
-
<p>[[Proteopedia:I3DC|List of I3DCs]]</p>
+
<p>[[Proteopedia:Video_Guide|Video Guides]]</p>
-
<p>[[How to get an I3DC for your paper]]</p>
+
<p>[[Who knows]] ...</p>
-
</td>
+
</td>
-
<td style="padding:10px;">
+
<td style="padding: 10px;>
-
<p>[[Teaching strategies using Proteopedia]]</p>
+
<p>[[I3DC|About Interactive 3D Complements - '''I3DCs''']]</p>
-
<p>[[Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages|Examples of pages for teaching]]</p>
+
<p>[[Proteopedia:I3DC|List of I3DCs]]</p>
-
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
+
<p>[[How to get an I3DC for your paper]]</p>
-
</td>
+
 
-
</tr>
+
</td>
 +
 
 +
<td style="padding: 10px;>
 +
<p>[[Teaching strategies using Proteopedia]]</p>
 +
<p>[[Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages|Examples of pages for teaching]]</p>
 +
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
 +
</td>
-
<tr>
 
-
<td colspan="3">
 
-
<table width="100%" style="padding:10px; background-color:#d7d8f9; font-size:1.5em;">
 
-
<tr>
 
-
<td>[[Proteopedia:About|About]]</td>
 
-
<td>[[Special:Contact|Contact]]</td>
 
-
<td>[[Template:MainPageNews|Hot News]]</td>
 
-
<td>[[Proteopedia:Table of Contents|Table of Contents]]</td>
 
-
<td>[[Proteopedia:Structure Index|Structure Index]]</td>
 
-
<td>[[Help:Contents|Help]]</td>
 
-
</tr>
 
-
</table>
 
-
</td>
 
</tr>
</tr>
 +
 +
<tr><td colspan='3' >
 +
<table width='100%' style="padding: 10px; background-color: #d7d8f9; font-size: 1.5em;"><tr>
 +
<td>[[Proteopedia:About|About]]</td>
 +
<td>[[Special:Contact|Contact]]</td>
 +
<td>[[Template:MainPageNews|Hot News]]</td>
 +
<td>[[Proteopedia:Table of Contents|Table of Contents]]</td>
 +
<td>[[Proteopedia:Structure Index|Structure Index]]</td>
 +
<td>[[Help:Contents|Help]]</td>
 +
</tr></table>
 +
</td></tr>
</table>
</table>

Revision as of 16:24, 30 September 2025

ISSN 2310-6301

As life is more than 2D, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules

Proteopedia presents this information in a user-friendly way as a collaborative & free 3D-encyclopedia of proteins & other biomolecules.

Selected Research Pages In Journals Education
About this image
Coronavirus Spike Protein Priming

by Eric Martz
Coronavirus SARS-CoV-2 (responsible for COVID-19) has a spike protein on its surface, which enables it to infect host cells. Initially, proteases in the lungs clip the homo-trimeric spike protein at a unique sequence. This primes it, causing it to extend its receptor binding surface (shown in the above animation), optimizing binding to the host cell's ACE2 receptor (not shown). Next, spike protein initiates fusion of the virus and host cell membranes (not shown), enabling the virus RNA to enter the cell and initiate production of new virions. Knowledge of spike protein's molecular structure and function is crucial to developing effective therapies and vaccines.
>>> Visit this page >>>

About this image
Geobacter pili: surprising function.

Y Gu, V Srikanth, AI Salazar-Morales, R Jain, JP O'Brien, SM Yi, RK Soni, FA Samatey, SE Yalcin, NS Malvankar. Nature 2021 doi: 10.1038/s41586-021-03857-w
Geobacter pili were long thought to be electrically conductive protein nanowires composed of PilA-N. Nanowires are crucial to the energy metabolism of bacteria flourishing in oxygen-deprived environments. To everyone's surprise, in 2019, the long-studied nanowires were found to be linear polymers of multi-heme cytochromes, not pili. The first cryo-EM structure of pili (2021) reveals a filament made of dimers of PilA-N and PilA-C, shown. Electrical conductivity of pili is much lower than that of cytochrome nanowires. Evidence suggests that PilA-NC filaments are periplasmic pseudopili crucial for exporting cytochrome nanowires onto the cell surface, rather than the pili serving as nanowires themselves.

>>> Visit I3DC Interactive Visualizations >>>

About this image
You Are What You Eat!

Above is an integral membrane protein that takes up, into your intestinal cells, orally consumed peptide nutrients and drugs. Its lumen-face (top) opens and binds peptide or drug (small solid object in the center), then closes, while its cytoplasmic face (bottom) opens to release its cargo into the intestinal cell, which passes it on to the blood circulation.

>>> See more animations and explanation >>>

How to add content to Proteopedia

Video Guides

Who knows ...

About Interactive 3D Complements - I3DCs

List of I3DCs

How to get an I3DC for your paper

Teaching strategies using Proteopedia

Examples of pages for teaching

How to add content to Proteopedia

About Contact Hot News Table of Contents Structure Index Help

Proteopedia Page Contributors and Editors (what is this?)

Joel L. Sussman, Jaime Prilusky

Personal tools