We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

Main Page

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:30, 30 September 2025) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
<table id="tableColumnsMainPage" style="width:100%;border:2px solid #ddd;border-collapse: collapse;table-layout: fixed; ">
<table id="tableColumnsMainPage" style="width:100%;border:2px solid #ddd;border-collapse: collapse;table-layout: fixed; ">
<tr><td colspan='3' style="background:#F5F5FC;border:1px solid #ddd;">
<tr><td colspan='3' style="background:#F5F5FC;border:1px solid #ddd;">
- 
-
<!-- NEW WRAPPER to contain the float -->
 
-
<div style="overflow:auto;">
 
- 
<div style="top:+0.2em; font-size:1.2em; padding:5px 5px 5px 10px; float:right;">'''''ISSN 2310-6301'''''</div>
<div style="top:+0.2em; font-size:1.2em; padding:5px 5px 5px 10px; float:right;">'''''ISSN 2310-6301'''''</div>
Line 15: Line 11:
</span>
</span>
-
</div><!-- /overflow:auto wrapper -->
 
</td></tr>
</td></tr>
Line 36: Line 31:
<td style="padding: 10px;background-color: #79baff"></td>
<td style="padding: 10px;background-color: #79baff"></td>
</tr>
</tr>
 +
<tr style="font-size: 1.0em; text-align: center;">
<tr style="font-size: 1.0em; text-align: center;">

Current revision

ISSN 2310-6301

As life is more than 2D, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules

Proteopedia presents this information in a user-friendly way as a collaborative & free 3D-encyclopedia of proteins & other biomolecules.


Selected Research Pages In Journals Education
About this image
Metal-Ligand Nano-Cages

This self-assembling structure has an interior cavity about 32 Å in diameter. It consists of 24 palladium ions, each of which is coordinated by 4 nitrogens, which are part of 48 dipyridylthiophene molecules. Such synthetic nano-spheres can be functionalized to create synthetic receptors and nanoreactors. Potential applications in sensing, catalysis, and drug delivery are being explored.

>>> See more animations and explanation >>>

About this image
Geobacter nanowire structure surprise.

F Wang, Y Gu, JP O'Brien, SM Yi, SE Yalcin, V Srikanth, C Shen, D Vu, NL Ing, AI Hochbaum, EH Egelman, NS Malvankar. Cell 2019 doi: 10.1016/j.cell.2019.03.029
Bacteria living in anaerobic environments (no oxygen) need alternative electron acceptors in order to get energy from their food. An acceptor abundant in the earth's crust is red iron oxide ("rust"), which gets reduced to black iron oxide (magnetite). Many bacteria, such as Geobacter, get their metabolic energy by transferring electrons to acceptors that are multiple cell diameters distant, using protein nanowires. These were long thought to be pili. But when the structure of the nanowires was solved in 2019, to everyone's surprise, they turned out to be unprecedented linear polymers of multi-heme cytochromes. The hemes form an electrically conductive chain in the cores of these nanowires.

>>> Visit I3DC Interactive Visualizations >>>

About this image
Touch-Sensitive Channel

Touching stretches cell membranes, opening mechanosensitive ion channels, leading to sensation by the nervous system. Pictured is the transmembrane region of a similar channel in bacteria. When closed, the narrow opening is lined by hydrophobic amino acid sidechains, making it non-conductive to ions.

>>> See more animations and explanation >>>

How to add content to Proteopedia

Video Guides

Who knows ...

About Interactive 3D Complements - I3DCs

List of I3DCs

How to get an I3DC for your paper

Teaching strategies using Proteopedia

Examples of pages for teaching

How to add content to Proteopedia

About Contact Hot News Table of Contents Structure Index Help

Proteopedia Page Contributors and Editors (what is this?)

Joel L. Sussman, Jaime Prilusky

Personal tools