6heg

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==Crystal structure of Escherichia coli DEAH/RHA helicase HrpB==
==Crystal structure of Escherichia coli DEAH/RHA helicase HrpB==
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<StructureSection load='6heg' size='340' side='right' caption='[[6heg]], [[Resolution|resolution]] 3.02&Aring;' scene=''>
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<StructureSection load='6heg' size='340' side='right'caption='[[6heg]], [[Resolution|resolution]] 3.02&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6heg]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HEG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HEG FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6heg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HEG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6HEG FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ALF:TETRAFLUOROALUMINATE+ION'>ALF</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.019&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/RNA_helicase RNA helicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.4.13 3.6.4.13] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ALF:TETRAFLUOROALUMINATE+ION'>ALF</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6heg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6heg OCA], [http://pdbe.org/6heg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6heg RCSB], [http://www.ebi.ac.uk/pdbsum/6heg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6heg ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6heg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6heg OCA], [https://pdbe.org/6heg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6heg RCSB], [https://www.ebi.ac.uk/pdbsum/6heg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6heg ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/HRPB_ECOLI HRPB_ECOLI]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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RNA helicases are almost ubiquitous important enzymes that take part in multiple aspects of RNA metabolism. Prokaryotes encode fewer RNA helicases than eukaryotes, suggesting that individual prokaryotic RNA helicases may take on multiple roles. The specific functions and molecular mechanisms of bacterial DEAH/RHA helicases are poorly understood, and no structures are available of these bacterial enzymes. Here, we report the first crystal structure of the DEAH/RHA helicase HrpB of Escherichia coli in a complex with ADP*AlF4. It showed an atypical globular structure, consisting of two RecA domains, an HA2 domain and an OB domain, similar to eukaryotic DEAH/RHA helicases. Notably, it showed a unique C-terminal extension that has never been reported before. Activity assays indicated that EcHrpB binds RNA but not DNA, and does not exhibit unwinding activity in vitro. Thus, within cells, the EcHrpB may function in helicase activity-independent RNA metabolic processes.
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Crystal structure of Escherichia coli DEAH/RHA helicase HrpB.,Xin BG, Chen WF, Rety S, Dai YX, Xi XG Biochem Biophys Res Commun. 2018 Sep 26;504(1):334-339. doi:, 10.1016/j.bbrc.2018.08.191. Epub 2018 Sep 4. PMID:30190128<ref>PMID:30190128</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6heg" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Helicase 3D structures|Helicase 3D structures]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: RNA helicase]]
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[[Category: Escherichia coli K-12]]
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[[Category: Chen, W F]]
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[[Category: Large Structures]]
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[[Category: Dai, Y X]]
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[[Category: Chen WF]]
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[[Category: Rety, S]]
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[[Category: Dai YX]]
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[[Category: Xi, X G]]
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[[Category: Rety S]]
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[[Category: Xin, B G]]
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[[Category: Xi XG]]
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[[Category: Deah/rha helicase rna helicase]]
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[[Category: Xin BG]]
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[[Category: Hydrolase]]
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Current revision

Crystal structure of Escherichia coli DEAH/RHA helicase HrpB

PDB ID 6heg

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