9rga

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(New page: '''Unreleased structure''' The entry 9rga is ON HOLD Authors: Benz, L.S., Wollenhaupt, J., Jirgensons, A., Miletic, T., Mueller, U., Weiss, M.S. Description: Crystal structure of Zika ...)
Current revision (07:28, 29 October 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9rga is ON HOLD
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==Crystal structure of Zika NS2B-NS3 protease in complex with follow-up compound EOS87208 from ECBL==
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<StructureSection load='9rga' size='340' side='right'caption='[[9rga]], [[Resolution|resolution]] 1.38&Aring;' scene=''>
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Authors: Benz, L.S., Wollenhaupt, J., Jirgensons, A., Miletic, T., Mueller, U., Weiss, M.S.
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9rga]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Zika_virus Zika virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9RGA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9RGA FirstGlance]. <br>
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Description: Crystal structure of Zika NS2B-NS3 protease in complex with follow-up compound EOS87208 from ECBL
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.38&#8491;</td></tr>
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[[Category: Unreleased Structures]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1JFZ:(3,5-dimethylfuran-2-yl)-[(2~{S})-2-(methylaminomethyl)pyrrolidin-1-yl]methanone'>A1JFZ</scene></td></tr>
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[[Category: Miletic, T]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9rga FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9rga OCA], [https://pdbe.org/9rga PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9rga RCSB], [https://www.ebi.ac.uk/pdbsum/9rga PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9rga ProSAT]</span></td></tr>
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[[Category: Wollenhaupt, J]]
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</table>
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[[Category: Weiss, M.S]]
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== Function ==
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[[Category: Mueller, U]]
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[https://www.uniprot.org/uniprot/POLG_ZIKV POLG_ZIKV] Protein C: Encapsulates the genomic RNA.[UniProtKB:P17763] prM: Acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the last step of virion assembly, presumably to avoid catastrophic activation of the viral fusion peptide induced by the acidic pH of the trans-Golgi network. After cleavage by host furin, the pr peptide is released in the extracellular medium and small envelope protein M and envelope protein E homodimers are dissociated.[UniProtKB:P17763] Envelope protein E: Binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes.[UniProtKB:P17763] Non-structural protein 1: Involved in virus replication and regulation of the innate immune response.[UniProtKB:P17763] Non-structural protein 2A: May be involved viral RNA replication and capsid assembly.[UniProtKB:P09732] Non-structural protein 4A: Induces host endoplasmic reticulum membrane rearrangements leading to the formation of virus-induced membranous vesicles hosting the dsRNA and polymerase, functioning as a replication complex. NS4A might also regulate the ATPase activity of the helicase region of Serine protease NS3 chain.[UniProtKB:P17763] Peptide 2k: Functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter.[UniProtKB:P17763] Non-structural protein 4B: Inhibits interferon (IFN)-induced host STAT1 phosphorylation and nuclear translocation, thereby preventing the establishment of cellular antiviral state by blocking the IFN-alpha/beta pathway.[UniProtKB:P17763]
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[[Category: Jirgensons, A]]
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__TOC__
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[[Category: Benz, L.S]]
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Zika virus]]
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[[Category: Benz LS]]
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[[Category: Jirgensons A]]
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[[Category: Miletic T]]
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[[Category: Mueller U]]
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[[Category: Weiss MS]]
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[[Category: Wollenhaupt J]]

Current revision

Crystal structure of Zika NS2B-NS3 protease in complex with follow-up compound EOS87208 from ECBL

PDB ID 9rga

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