9rpk
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 9rpk is ON HOLD Authors: Sorci, L., Cianci, M., Fortunato, C., Gasparrini, M., Raffaelli, N. Description: Apo structure of Arabidopsis thaliana nic...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Apo structure of Arabidopsis thaliana nicotinate mononucleotide adenylyltransferase== | |
| + | <StructureSection load='9rpk' size='340' side='right'caption='[[9rpk]], [[Resolution|resolution]] 2.15Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[9rpk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9RPK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9RPK FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9rpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9rpk OCA], [https://pdbe.org/9rpk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9rpk RCSB], [https://www.ebi.ac.uk/pdbsum/9rpk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9rpk ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/NMNAT_ARATH NMNAT_ARATH] Catalyzes the formation of NAD(+) from nicotinamide mononucleotide (NMN) and ATP. Can also use the deamidated form; nicotinic acid mononucleotide (NaMN) as substrate.[UniProtKB:Q9HAN9] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The pyridine nucleotide adenylyltransferase (PNAT) enzyme family is crucial for the synthesis of NAD, a pivotal cofactor in cellular metabolism. PNATs catalyze the transfer of an AMP moiety from ATP to either nicotinate mononucleotide (NaMN), forming nicotinate adenine dinucleotide, the immediate precursor to NAD, or to nicotinamide mononucleotide (NMN), directly yielding NAD. This enzyme family exhibits modular substrate specificity, comprising strictly NaMN-selective (bacterial NadD), NMN-selective (bacterial NadR and NadM), or bifunctional (mammalian PNAT and archaeal NadM). While Arabidopsis thaliana PNAT has been ambiguously annotated as bifunctional, our detailed kinetic analysis definitively establishes its strict NaMN preference, analogous to bacterial NadD. By integrating bioinformatics and X-ray crystallography of the enzyme in its apo and NaMN-bound forms, we elucidate the structural basis for NaMN selectivity, which differs from bacterial NadD. In plants, a positively charged residue (Arg106 in A. thaliana NaMN adenylyltransferase, NaMNAT) ensures NaMN specificity by counteracting the negative charge of the nicotinate moiety. Site-directed mutagenesis confirms the essential role of Arg106 in NaMN recognition and catalysis. Our findings support the extension of this functional assignment across Archaeoplastida. Furthermore, phylogenetic analysis reveals the complex and intertwined evolution of bacterial and plant NaMNATs, shaped by ancient gene transfers from cyanobacteria. | ||
| - | + | Arabidopsis thaliana nicotinate mononucleotide adenylyltransferase: unveiling the molecular determinants and evolutionary origin of nicotinic acid mononucleotide recognition.,Sorci L, Cianci M, Fortunato C, Gasparrini M, Raffaelli N Int J Biol Macromol. 2025 Oct 16;331(Pt 1):148370. doi: , 10.1016/j.ijbiomac.2025.148370. PMID:41109367<ref>PMID:41109367</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 9rpk" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | == References == |
| - | [[Category: | + | <references/> |
| - | [[Category: | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| + | [[Category: Arabidopsis thaliana]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Cianci M]] | ||
| + | [[Category: Fortunato C]] | ||
| + | [[Category: Gasparrini M]] | ||
| + | [[Category: Raffaelli N]] | ||
| + | [[Category: Sorci L]] | ||
Current revision
Apo structure of Arabidopsis thaliana nicotinate mononucleotide adenylyltransferase
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