Malate Dehydrogenase 3D structures

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Line 11: Line 11:
**[[7bsj]], [[7bsk]], [[7bsl]] – hMd2 (mutant) +NAD<br />
**[[7bsj]], [[7bsk]], [[7bsl]] – hMd2 (mutant) +NAD<br />
**[[4mdh]] – pMDH+NAD - pig<br />
**[[4mdh]] – pMDH+NAD - pig<br />
-
**[[2x0r]] – HmMDH (mutant)+NAD - ''Haloarcula marismortui''<br />
+
**[[1o6z]], [[2x0r]] – HmMDH (mutant)+NAD - ''Haloarcula marismortui''<br />
-
**[[1o6z]] - HmMDH (mutant)+NADH<br />
+
**[[1hlp]] – HmMDH+NAD<br />
**[[1hlp]] – HmMDH+NAD<br />
**[[1x0i]] – AfMDH+NADH – ''Archaeoglobus fulgidus''<br />
**[[1x0i]] – AfMDH+NADH – ''Archaeoglobus fulgidus''<br />
Line 35: Line 34:
**[[4i1i]] – LmMd + NAD – ''Leishmania major''<br />
**[[4i1i]] – LmMd + NAD – ''Leishmania major''<br />
**[[5ujk]] – MeMd + NAD - ''Methylobacterium extorquens'' <br />
**[[5ujk]] – MeMd + NAD - ''Methylobacterium extorquens'' <br />
-
**[[5nuf]], [[5nue]] – Md1 + NAD – ''Arabidopsis thaliana''<br />
+
**[[5nuf]], [[5nue]] – AtMd1 + NAD – ''Arabidopsis thaliana''<br />
**[[4uup]] – Md + NADH - ''Trichiminad'' <br />
**[[4uup]] – Md + NADH - ''Trichiminad'' <br />
**[[5kvv]] – MtMd + NADH – ''Mycobacterium tuberculosis'' <br />
**[[5kvv]] – MtMd + NADH – ''Mycobacterium tuberculosis'' <br />
Line 42: Line 41:
**[[6y91]] – PfMd + NAD – ''Plasmodium falciparum''<br />
**[[6y91]] – PfMd + NAD – ''Plasmodium falciparum''<br />
**[[6zn7]] – BbMd + NADP – ''Bdellovibrio bacteriovorus''<br />
**[[6zn7]] – BbMd + NADP – ''Bdellovibrio bacteriovorus''<br />
 +
**[[7f8d]], [[7x1l]] – GsMd (mutant) + NADH – ''Geobacillus stearophilus''<br />
 +
**[[8rs5]], [[9qcg]] – MkMd + NDP – ''Methanopyrus kandleri''<br />
 +
**[[8rwl]], [[9end]] – MkMd (mutant) + NDP <br />
 +
**[[9sa7]] – MjMd + NDP – ''Methanocaldococcus jannaschii''<br />
 +
**[[9sc9]] – MjMd (mutant) + NDP <br />
 +
**[[9sd3]] – Md + NDP – ''Methanocaldococcus infernus''<br />
 +
**[[9s3k]], [[9s3y]] – Md + NDP – ancestral ''Methanocaldococcus'' <br />
* Md binary complex
* Md binary complex
 +
**[[7rm9]] – hMd1 + malonate <br />
**[[4wle]] – hMd2 + citrate <br />
**[[4wle]] – hMd2 + citrate <br />
**[[4wlf]] – hMd2 + malate <br />
**[[4wlf]] – hMd2 + malate <br />
**[[5kka]] – EcMd + inhibitor <br />
**[[5kka]] – EcMd + inhibitor <br />
**[[5z3w]], [[6ka0]] – EcMd + Ag<br />
**[[5z3w]], [[6ka0]] – EcMd + Ag<br />
 +
**[[9wxs]] – EcMd (mutant) + Ag<br />
**[[2cmd]] - EcMd + citrate<br />
**[[2cmd]] - EcMd + citrate<br />
**[[3gvi]] - BmMDH+ADP<br />
**[[3gvi]] - BmMDH+ADP<br />
Line 57: Line 65:
**[[6zng]], [[6znt]] – BbMd + acetyl-CoA<br />
**[[6zng]], [[6znt]] – BbMd + acetyl-CoA<br />
**[[6znu]] – BbMd (mutant) + acetyl-CoA<br />
**[[6znu]] – BbMd (mutant) + acetyl-CoA<br />
 +
**[[8ggd]], [[8ggh]], [[8gh2]], [[8gh3]], [[9fef]] – TcMd + PEX5 – ''Trypanosoma cruzi'' – Cryo EM<br />
* Md ternary complex
* Md ternary complex
Line 63: Line 72:
**[[4wlu]] – hMd2 + NADH + malate <br />
**[[4wlu]] – hMd2 + NADH + malate <br />
**[[5mdh]] – pMd+NAD+alpha-ketomalonic acid <br />
**[[5mdh]] – pMd+NAD+alpha-ketomalonic acid <br />
 +
**[[9d2f]] – mMd in radial spoke complex – Cryo EM<br />
**[[5zi2]] – yMd + NAD + ADP - yeast<br />
**[[5zi2]] – yMd + NAD + ADP - yeast<br />
**[[5zi4]] – yMd + NAD + oxalacetate <br />
**[[5zi4]] – yMd + NAD + oxalacetate <br />
Line 75: Line 85:
**[[7by9]] – GsMd + NADH + oxalacetate – ''Geobacillus stearophilus''<br />
**[[7by9]] – GsMd + NADH + oxalacetate – ''Geobacillus stearophilus''<br />
**[[7bya]] – GsMd + adenosine diphosphoribose + oxalacetate <br />
**[[7bya]] – GsMd + adenosine diphosphoribose + oxalacetate <br />
 +
**[[8gi0]] – TcMd + PEX5 + PEX14 – Cryo EM<br />
 +
**[[8xku]], [[8xkv]] – AtMd in Ycf2-FtsHI motor complex – Cryo EM<br />
 +
**[[8jd5]] – AtMd in starch degradation complex – Cryo EM<br />
* apo-MDH
* apo-MDH
 +
**[[7rrl]] – hMd1<br />
**[[4wln]] – hMd2 <br />
**[[4wln]] – hMd2 <br />
**[[1mld]] – pMDH<br />
**[[1mld]] – pMDH<br />
Line 83: Line 97:
**[[5zi3]] – yMd <br />
**[[5zi3]] – yMd <br />
**[[2j5r]], [[2j5k]], [[2j5q]], [[1d3a]], [[4jco]] – HmMDH <br />
**[[2j5r]], [[2j5k]], [[2j5q]], [[1d3a]], [[4jco]] – HmMDH <br />
-
**[[2hlp]] – HmMDH (mutant)<br />
+
**[[2hlp]], [[7q3x]] – HmMDH (mutant)<br />
**[[3hhp]], [[2pwz]], [[6ka1]], [[7cgc]], [[7cgd]] – EcMDH <br />
**[[3hhp]], [[2pwz]], [[6ka1]], [[7cgc]], [[7cgd]] – EcMDH <br />
 +
**[[7xqn]] – EcMd (mutant) br />
**[[3fi9]] – MDH – ''Porphyromonas gingivalis'' <br />
**[[3fi9]] – MDH – ''Porphyromonas gingivalis'' <br />
**[[3d5t]] - MDH – ''Burkholderia pseudomallei''<br />
**[[3d5t]] - MDH – ''Burkholderia pseudomallei''<br />
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**[[4bgu]] – Md – ''Haloferax volcanii''<br />
**[[4bgu]] – Md – ''Haloferax volcanii''<br />
**[[4bgv]] – Md – ''Picrophilus torridus''<br />
**[[4bgv]] – Md – ''Picrophilus torridus''<br />
-
**[[4ror]], [[5ulv]] – MeMd <br />
+
**[[5ulv]] – MeMd <br />
**[[4tvo]] – Md – ''Mycobacterium tuberculosis'' <br />
**[[4tvo]] – Md – ''Mycobacterium tuberculosis'' <br />
**[[6aoo]] – HiMd <br />
**[[6aoo]] – HiMd <br />
Line 111: Line 126:
**[[6zne]], [[6znk]], [[6znr]] – BbMd (mutant)<br />
**[[6zne]], [[6znk]], [[6znr]] – BbMd (mutant)<br />
**[[7aob]] – Md – ''Thermaerobacter marianensis''<br />
**[[7aob]] – Md – ''Thermaerobacter marianensis''<br />
 +
**[[7nrz]] – TcMd <br />
 +
**[[9fee]] – TcMd – Cryo EM<br />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D Structures of Malate Dehydrogenase

Updated on 10-December-2025
The holo-MDH contains NAD or its derivatives while the apo-MDH lacks it.

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

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