2h1c

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[[Image:2h1c.gif|left|200px]]
[[Image:2h1c.gif|left|200px]]
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{{Structure
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<!--
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|PDB= 2h1c |SIZE=350|CAPTION= <scene name='initialview01'>2h1c</scene>, resolution 1.80&Aring;
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The line below this paragraph, containing "STRUCTURE_2h1c", creates the "Structure Box" on the page.
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|SITE= <scene name='pdbsite=AC1:Act+Binding+Site+For+Residue+A+140'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+201'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+A+202'>AC3</scene>, <scene name='pdbsite=AC4:Mg+Binding+Site+For+Residue+A+203'>AC4</scene>, <scene name='pdbsite=AC5:Mg+Binding+Site+For+Residue+A+204'>AC5</scene> and <scene name='pdbsite=AC6:Mg+Binding+Site+For+Residue+A+205'>AC6</scene>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY=
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or leave the SCENE parameter empty for the default display.
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|GENE= fitB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=485 Neisseria gonorrhoeae]), fitA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=485 Neisseria gonorrhoeae])
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-->
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|DOMAIN=
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{{STRUCTURE_2h1c| PDB=2h1c | SCENE= }}
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|RELATEDENTRY=
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2h1c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h1c OCA], [http://www.ebi.ac.uk/pdbsum/2h1c PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2h1c RCSB]</span>
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}}
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'''Crystal Structure of FitAcB from Neisseria gonorrhoeae'''
'''Crystal Structure of FitAcB from Neisseria gonorrhoeae'''
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[[Category: So, M.]]
[[Category: So, M.]]
[[Category: Wilbur, J S.]]
[[Category: Wilbur, J S.]]
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[[Category: dna binding]]
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[[Category: Dna binding]]
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[[Category: gene regulation]]
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[[Category: Gene regulation]]
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[[Category: pin domain]]
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[[Category: Pin domain]]
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[[Category: rhh domain]]
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[[Category: Rhh domain]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 05:45:12 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:24:04 2008''
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Revision as of 02:45, 4 May 2008

Template:STRUCTURE 2h1c

Crystal Structure of FitAcB from Neisseria gonorrhoeae


Overview

Neisseria gonorrhoeae is a sexually transmitted pathogen that initiates infections in humans by adhering to the mucosal epithelium of the urogenital tract. The bacterium then enters the apical region of the cell and traffics across the cell to exit into the subepithelial matrix. Mutations in the fast intracellular trafficking (fitAB) locus cause the bacteria to transit a polarized epithelial monolayer more quickly than the wild-type parent and to replicate within cells at an accelerated rate. Here, we describe the crystal structure of the toxin-antitoxin heterodimer, FitAB, bound to a high affinity 36-bp DNA fragment from the fitAB promoter. FitA, the antitoxin, binds DNA through its ribbon-helix-helix motif and is tethered to FitB, the toxin, to form a heterodimer by the insertion of a four turn alpha-helix into an extensive FitB hydrophobic pocket. FitB is composed of a PIN (PilT N terminus) domain, with a central, twisted, 5-stranded parallel beta-sheet that is open on one side and flanked by five alpha-helices. FitB in the context of the FitAB complex does not display nuclease activity against tested PIN substrates. The FitAB complex points to the mechanism by which antitoxins with RHH motifs can block the activity of toxins with PIN domains. Interactions between two FitB molecules result in the formation of a tetramer of FitAB heterodimers, which binds to the 36-bp DNA fragment and provides an explanation for how FitB enhances the DNA binding affinity of FitA.

About this Structure

2H1C is a Protein complex structure of sequences from Neisseria gonorrhoeae. Full crystallographic information is available from OCA.

Reference

Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs., Mattison K, Wilbur JS, So M, Brennan RG, J Biol Chem. 2006 Dec 8;281(49):37942-51. Epub 2006 Sep 18. PMID:16982615 Page seeded by OCA on Sun May 4 05:45:12 2008

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