2itj

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[[Image:2itj.jpg|left|200px]]
[[Image:2itj.jpg|left|200px]]
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{{Structure
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|PDB= 2itj |SIZE=350|CAPTION= <scene name='initialview01'>2itj</scene>, resolution 2.5&Aring;
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The line below this paragraph, containing "STRUCTURE_2itj", creates the "Structure Box" on the page.
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|SITE=
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|GENE= large T antigen ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10633 Simian virus 40])
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|DOMAIN=
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{{STRUCTURE_2itj| PDB=2itj | SCENE= }}
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|RELATEDENTRY=[[2ipr|2IPR]], [[2itl|2ITL]], [[2nl8|2NL8]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2itj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2itj OCA], [http://www.ebi.ac.uk/pdbsum/2itj PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2itj RCSB]</span>
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'''Origin binding domain of the SV40 large T antigen (residues 131-259). P212121 crystal form'''
'''Origin binding domain of the SV40 large T antigen (residues 131-259). P212121 crystal form'''
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[[Category: Bochkareva, E.]]
[[Category: Bochkareva, E.]]
[[Category: Martynowski, D.]]
[[Category: Martynowski, D.]]
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[[Category: dna binding protein]]
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[[Category: Dna binding protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 07:51:07 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:48:25 2008''
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Revision as of 04:51, 4 May 2008

Template:STRUCTURE 2itj

Origin binding domain of the SV40 large T antigen (residues 131-259). P212121 crystal form


Overview

The large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori) in simian virus 40 (SV40). Here, we determined the crystal structures of the T-ag origin-binding domain (OBD) in apo form, and bound to either a 17 bp palindrome (sites 1 and 3) or a 23 bp ori DNA palindrome comprising all four GAGGC binding sites for OBD. The T-ag OBDs were shown to interact with the DNA through a loop comprising Ser147-Thr155 (A1 loop), a combination of a DNA-binding helix and loop (His203-Asn210), and Asn227. The A1 loop traveled back-and-forth along the major groove and accounted for most of the sequence-determining contacts with the DNA. Unexpectedly, in both T-ag-DNA structures, the T-ag OBDs bound DNA independently and did not make direct protein-protein contacts. The T-ag OBD was also captured bound to a non-consensus site ATGGC even in the presence of its canonical site GAGGC. Our observations taken together with the known biochemical and structural features of the T-ag-origin interaction suggest a model for origin unwinding.

About this Structure

2ITJ is a Single protein structure of sequence from Simian virus 40. Full crystallographic information is available from OCA.

Reference

Structure of the origin-binding domain of simian virus 40 large T antigen bound to DNA., Bochkareva E, Martynowski D, Seitova A, Bochkarev A, EMBO J. 2006 Dec 13;25(24):5961-9. Epub 2006 Nov 30. PMID:17139255 Page seeded by OCA on Sun May 4 07:51:07 2008

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