This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1k2h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1k2h.jpg|left|200px]]
+
{{Seed}}
 +
[[Image:1k2h.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1k2h| PDB=1k2h | SCENE= }}
{{STRUCTURE_1k2h| PDB=1k2h | SCENE= }}
-
'''Three-dimensional Solution Structure of apo-S100A1.'''
+
===Three-dimensional Solution Structure of apo-S100A1.===
-
==Overview==
+
<!--
-
S100A1, a member of the S100 protein family, is an EF-hand containing Ca(2+)-binding protein (93 residues per subunit) with noncovalent interactions at its dimer interface. Each subunit of S100A1 has four alpha-helices and a small antiparallel beta-sheet consistent with two helix-loop-helix calcium-binding domains [Baldiserri et al. (1999) J. Biomol. NMR 14, 87-88]. In this study, the three-dimensional structure of reduced apo-S100A1 was determined by NMR spectroscopy using a total of 2220 NOE distance constraints, 258 dihedral angle constraints, and 168 backbone hydrogen bond constraints derived from a series of 2D, 3D, and 4D NMR experiments. The final structure was found to be globular and compact with the four helices in each subunit aligning to form a unicornate-type four-helix bundle. Intermolecular NOE correlations were observed between residues in helices 1 and 4 from one subunit to residues in helices 1' and 4' of the other subunit, respectively, consistent with the antiparallel alignment of the two subunits to form a symmetric X-type four-helix bundle as found for other members of the S100 protein family. Because of the similarity of the S100A1 dimer interface to that found for S100B, it was possible to calculate a model of the S100A1/B heterodimer. This model is consistent with a number of NMR chemical shift changes observed when S100A1 is titrated into a sample of (15)N-labeled S100B. Helix 3 (and 3') of S100A1 was found to have an interhelical angle of -150 degrees with helix 4 (and 4') in the apo state. This crossing angle is quite different (&gt;50 degrees ) from that typically found in other EF-hand containing proteins such as apocalmodulin and apotroponin C but more similar to apo-S100B, which has an interhelical angle of -166 degrees. As with S100B, it is likely that the second EF-hand of apo-S100A1 reorients dramatically upon the addition of Ca(2+), which can explain the Ca(2+) dependence that S100A1 has for binding several of its biological targets.
+
The line below this paragraph, {{ABSTRACT_PUBMED_11790100}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 11790100 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_11790100}}
==About this Structure==
==About this Structure==
-
1K2H is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K2H OCA].
+
1K2H is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K2H OCA].
==Reference==
==Reference==
Line 32: Line 36:
[[Category: Non-covalent homodimer]]
[[Category: Non-covalent homodimer]]
[[Category: X-type four-helix bundle]]
[[Category: X-type four-helix bundle]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 22:13:14 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 21:32:47 2008''

Revision as of 18:33, 1 July 2008

Image:1k2h.png

Template:STRUCTURE 1k2h

Three-dimensional Solution Structure of apo-S100A1.

Template:ABSTRACT PUBMED 11790100

About this Structure

1K2H is a Single protein structure of sequence from Rattus norvegicus. Full experimental information is available from OCA.

Reference

Three-dimensional solution structure of the calcium-signaling protein apo-S100A1 as determined by NMR., Rustandi RR, Baldisseri DM, Inman KG, Nizner P, Hamilton SM, Landar A, Landar A, Zimmer DB, Weber DJ, Biochemistry. 2002 Jan 22;41(3):788-96. PMID:11790100

Page seeded by OCA on Tue Jul 1 21:32:47 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1k2h"
Personal tools