This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1n37

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1n37.gif|left|200px]]
+
{{Seed}}
 +
[[Image:1n37.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1n37| PDB=1n37 | SCENE= }}
{{STRUCTURE_1n37| PDB=1n37 | SCENE= }}
-
'''NMR Solution Structure of the Anthracycline Respinomycin D Intercalation Complex with a Double Stranded DNA Molecule (AGACGTCT)2'''
+
===NMR Solution Structure of the Anthracycline Respinomycin D Intercalation Complex with a Double Stranded DNA Molecule (AGACGTCT)2===
-
==Overview==
+
<!--
-
Respinomycin D is a member of the anthracycline family of antitumour antibiotics that interact with double stranded DNA through intercalation. The clinical agents daunomycin and doxorubicin are the most well-studied of this class but have a relatively simple molecular architecture in which the pendant daunosamine sugar resides in the DNA minor groove. Respinomycin D, which belongs to the nogalamycin group of anthracyclines, possesses additional sugar residues at either end of the aglycone chromophore that modulate the biological activity but whose role in molecular recognition is unknown. We report the NMR structure of the respinomycin D-d(AGACGTCT)2 complex in solution derived from NOE restraints and molecular dynamics simulations. We show that the drug threads through the DNA double helix forming stabilising interactions in both the major and minor groove, the latter through a different binding geometry to that previously reported. The bicycloaminoglucose sugar resides in the major groove and makes specific contacts with guanine at the 5'-CpG intercalation site, however, the disaccharide attached at the C4 position plays little part in drug binding and DNA recognition and is largely solvent exposed.
+
The line below this paragraph, {{ABSTRACT_PUBMED_12929391}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 12929391 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_12929391}}
==About this Structure==
==About this Structure==
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N37 OCA].
+
Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N37 OCA].
==Reference==
==Reference==
Line 28: Line 32:
[[Category: Nmr spectroscopy]]
[[Category: Nmr spectroscopy]]
[[Category: Respinomycin d]]
[[Category: Respinomycin d]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 02:02:07 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 09:52:33 2008''

Revision as of 06:52, 28 July 2008

Image:1n37.png

Template:STRUCTURE 1n37

NMR Solution Structure of the Anthracycline Respinomycin D Intercalation Complex with a Double Stranded DNA Molecule (AGACGTCT)2

Template:ABSTRACT PUBMED 12929391

About this Structure

Full experimental information is available from OCA.

Reference

DNA recognition by the anthracycline antibiotic respinomycin D: NMR structure of the intercalation complex with d(AGACGTCT)2., Searle MS, Maynard AJ, Williams HE, Org Biomol Chem. 2003 Jan 7;1(1):60-6. PMID:12929391

Page seeded by OCA on Mon Jul 28 09:52:33 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1n37"
Personal tools