This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1spw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:1spw.gif|left|200px]]
+
{{Seed}}
 +
[[Image:1spw.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_1spw| PDB=1spw | SCENE= }}
{{STRUCTURE_1spw| PDB=1spw | SCENE= }}
-
'''Solution Structure of a Loop Truncated Mutant from D. gigas Rubredoxin, NMR'''
+
===Solution Structure of a Loop Truncated Mutant from D. gigas Rubredoxin, NMR===
-
==Overview==
+
<!--
-
Despite their high sequence homology, rubredoxins from Desulfovibrio gigas and D. desulfuricans are stabilized to very different extents by compatible solutes such as diglycerol phosphate, the major osmolyte in the hyperthermophilic archaeon Archaeoglobus fulgidus[Lamosa P, Burke A, Peist R, Huber R, Liu M Y, Silva G, Rodrigues-Pousada C, LeGall J, Maycock C and Santos H (2000) Appl Environ Microbiol66, 1974-1979]. The principal structural difference between these two proteins is the absence of the hairpin loop in the rubredoxin from D. desulfuricans. Therefore, mutants of D. gigas rubredoxin bearing deletions in the loop region were constructed to investigate the importance of this structural feature on protein intrinsic stability, as well as on its capacity to undergo stabilization by compatible solutes. The three-dimensional structure of the mutant bearing the largest deletion, Delta17/29, was determined by 1H-NMR, demonstrating that, despite the drastic deletion, the main structural features were preserved. The dependence of the NH chemical shifts on temperature and solute concentration (diglycerol phosphate or mannosylglycerate) provide evidence of subtle conformational changes induced by the solute. The kinetic stability (as assessed from the absorption decay at 494 nm) of six mutant rubredoxins was determined at 90 degrees C and the stabilizing effect exerted by both solutes was assessed. The extent of protection conferred by each solute was highly dependent on the specific mutant examined: while the half-life for iron release in the wild-type D. gigas rubredoxin increased threefold in the presence of 0.1 M diglycerol phosphate, mutant Delta23/29 was destabilized. This study provides evidence for solute-induced compaction of the protein structure and occurrence of weak, specific interactions with the protein surface. The relevance of these findings to our understanding of the molecular basis for protein stabilization is discussed.
+
The line below this paragraph, {{ABSTRACT_PUBMED_15691333}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 15691333 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_15691333}}
==About this Structure==
==About this Structure==
-
1SPW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SPW OCA].
+
1SPW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SPW OCA].
==Reference==
==Reference==
Line 29: Line 33:
[[Category: Turner, D L.]]
[[Category: Turner, D L.]]
[[Category: Truncated loop]]
[[Category: Truncated loop]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 08:59:48 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 04:02:17 2008''

Revision as of 01:02, 29 July 2008

Image:1spw.png

Template:STRUCTURE 1spw

Solution Structure of a Loop Truncated Mutant from D. gigas Rubredoxin, NMR

Template:ABSTRACT PUBMED 15691333

About this Structure

1SPW is a Single protein structure of sequence from Desulfovibrio gigas. Full experimental information is available from OCA.

Reference

Structural determinants of protein stabilization by solutes. The important of the hairpin loop in rubredoxins., Pais TM, Lamosa P, dos Santos W, Legall J, Turner DL, Santos H, FEBS J. 2005 Feb;272(4):999-1011. PMID:15691333

Page seeded by OCA on Tue Jul 29 04:02:17 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1spw"
Personal tools